ecodist: Dissimilarity-based functions for ecological analysis

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Dissimilarity-based analysis functions including ordination and Mantel test functions, intended for use with spatial and community data.

Author
Sarah Goslee and Dean Urban
Date of publication
2013-12-03 22:07:08
Maintainer
Sarah Goslee <Sarah.Goslee@ars.usda.gov>
License
GPL (>= 2)
Version
1.2.9

View on CRAN

Man pages

bcdist
Bray-Curtis distance
bump
Nine-bump spatial pattern
cor2m
Generates a correlation table between the variables of 2...
corgen
Generate correlated data
crosstab
Data formatting
distance
Calculate dissimilarity/distance metrics
ecodist-package
Dissimilarity-based functions for ecological analysis
fixdmat
Distance matrix conversion
full
Full symmetric matrix
graze
Site information and grazed vegetation data.
lower
Lower-triangular matrix
mantel
Mantel test
mgram
Mantel correlogram
MRM
Multiple Regression on distance Matrices
nmds
Non-metric multidimensional scaling
nmds.min
Find minimum stress configuration
pco
Principal coordinates analysis
permresults
Mantel test results for number of permutations, correlation...
plot.mgram
Plot a Mantel correlogram
plot.vf
Plots fitted vectors onto an ordination diagram
pmgram
Partial Mantel correlogram
residuals.mgram
Residuals of a Mantel correlogram
vf
Vector fitting

Files in this package

ecodist
ecodist/inst
ecodist/inst/CITATION
ecodist/src
ecodist/src/Makevars
ecodist/src/ecodist.c
ecodist/NAMESPACE
ecodist/data
ecodist/data/permresults.rda
ecodist/data/graze.rda
ecodist/data/datalist
ecodist/data/bump.rda
ecodist/R
ecodist/R/fixdmat.R
ecodist/R/bcdist.R
ecodist/R/nmdsmin.R
ecodist/R/lower.R
ecodist/R/crosstab.R
ecodist/R/plot.mgram.R
ecodist/R/pmgram.R
ecodist/R/MRM.R
ecodist/R/residuals.mgram.R
ecodist/R/mgram.R
ecodist/R/vf.R
ecodist/R/plot.vf.R
ecodist/R/pco.R
ecodist/R/nmds.R
ecodist/R/cor2m.R
ecodist/R/full.R
ecodist/R/mantel.R
ecodist/R/corgen.R
ecodist/R/distance.R
ecodist/MD5
ecodist/DESCRIPTION
ecodist/man
ecodist/man/mgram.Rd
ecodist/man/nmds.min.Rd
ecodist/man/permresults.Rd
ecodist/man/crosstab.Rd
ecodist/man/fixdmat.Rd
ecodist/man/cor2m.Rd
ecodist/man/pmgram.Rd
ecodist/man/distance.Rd
ecodist/man/lower.Rd
ecodist/man/mantel.Rd
ecodist/man/plot.mgram.Rd
ecodist/man/corgen.Rd
ecodist/man/MRM.Rd
ecodist/man/ecodist-package.Rd
ecodist/man/full.Rd
ecodist/man/graze.Rd
ecodist/man/bump.Rd
ecodist/man/nmds.Rd
ecodist/man/plot.vf.Rd
ecodist/man/vf.Rd
ecodist/man/pco.Rd
ecodist/man/residuals.mgram.Rd
ecodist/man/bcdist.Rd