ecolMod-package | R Documentation |
Figures, data sets and examples from the book "A practical guide to ecological modelling - using R as a simulation platform" by Karline Soetaert and Peter MJ Herman (2009). Springer, 372 pp.
http://www.springer.com/life+sciences/ecology/book/978-1-4020-8623-6
All figures from chapter x can
be generated by demo(chapx)
, where x = 1 to 11.
The R-scripts of the model examples discussed in the book are in subdirectory "examples", ordered per chapter.
Solutions to model projects are in the same subdirectories.
Package: | ecolMod |
Type: | Package |
Version: | 1.2.3 |
Date: | 2011-03-15 |
License: | GNU Public License 2 or above |
Karline Soetaert (Maintainer) and Peter M.J. Herman
OMEXDIAsteady
steady-state application of the OMEXDIA
diagenetic model - a fortran DLL
SCOC
a Sediment Community Oxygen Consumption (SCOC) dataset
Zoogrowth
a zooplankton growth dataset
deepCmin
results of the calibration exercise from chapter 4.4.4
dilution
Draws dilution culture setup
pricefit
Pseudo-random search algorithm of Price (1997)
## Not run: ## show examples (see respective help pages for details) example(pricefit) example(SCOC) ## run demos demo("chap1") # chapter 1. Introduction demo("chap2") # chapter 2. Model formulation demo("chap3") # chapter 3. Spatial components and transport demo("chap4") # chapter 4. Parameterisation demo("chap5") # chapter 5. Model solution - analytical methods demo("chap6") # chapter 6. Model solution - numerical methods demo("chap7") # chapter 7. Stability and steady-state demo("chap8") # chapter 8. Multiple time scales and equilibrium processes demo("chap9") # chapter 9. Discrete time models demo("chap10") # chapter 10. Dynamic programming demo("chap11") # chapter 11. Testing and validating the model ## open the directory with source code of demos browseURL(paste(system.file(package="ecolMod"), "/demo", sep="")) ## open the directory with book examples browseURL(paste(system.file(package="ecolMod"), "/doc/examples", sep="")) ## ecolMod vignette: vignette("ecolMod") ## End(Not run)
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