ecospace: Simulating Community Assembly and Ecological Diversification Using Ecospace Frameworks

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Implements stochastic simulations of community assembly (ecological diversification) using customizable ecospace frameworks (functional trait spaces). Provides a wrapper to calculate common ecological disparity and functional ecology statistical dynamics as a function of species richness. Functions are written so they will work in a parallel-computing environment.

Author
Phil Novack-Gottshall [aut, cre]
Date of publication
2015-10-29 15:36:21
Maintainer
Phil Novack-Gottshall <pnovack-gottshall@ben.edu>
License
CC0
Version
1.0.0
URLs

View on CRAN

Man pages

calc_metrics
Calculate Ecological Disparity (Functional Diversity)...
create_ecospace
Create Ecospace Framework.
ecospace-package
ecospace: Simulating Community Assembly and Ecological...
expansion
Use Expansion Rule to Simulate Ecological Diversification of...
KWTraits
Species-by-Trait Matrix for Late Ordovician Marine Fossils.
neutral
Use Neutral Rule to Simulate Ecological Diversification of a...
partitioning
Use Partitioning Rule to Simulate Ecological Diversification...
prep_data
Internal Ecospace Functions.
rbind_listdf
Combine Large Lists of Data Frames.
redundancy
Use Redundancy Rule to Simulate Ecological Diversification of...
sample2
Internal Ecospace Functions.
unique2
Internal Ecospace Functions.

Files in this package

ecospace
ecospace/NAMESPACE
ecospace/data
ecospace/data/KWTraits.rda
ecospace/R
ecospace/R/calc_metrics.R
ecospace/R/expansion.R
ecospace/R/KWTraits.R
ecospace/R/redundancy.R
ecospace/R/neutral.R
ecospace/R/partitioning.R
ecospace/R/sample2.R
ecospace/R/unique2.R
ecospace/R/prep_data.R
ecospace/R/create_ecospace.R
ecospace/R/ecospace.R
ecospace/R/rbind_listdf.R
ecospace/MD5
ecospace/DESCRIPTION
ecospace/man
ecospace/man/expansion.Rd
ecospace/man/partitioning.Rd
ecospace/man/neutral.Rd
ecospace/man/calc_metrics.Rd
ecospace/man/sample2.Rd
ecospace/man/rbind_listdf.Rd
ecospace/man/KWTraits.Rd
ecospace/man/prep_data.Rd
ecospace/man/redundancy.Rd
ecospace/man/unique2.Rd
ecospace/man/create_ecospace.Rd
ecospace/man/ecospace-package.Rd