ecospat.max.kappa: Maximum Kappa

Description Usage Arguments Value Author(s) References See Also Examples

View source: R/ecospat.eval.R

Description

Calculates values for Cohen's Kappa along different thresholds, considering this time 0.01 increments (i.e. 99 thresholds).

Usage

1
    ecospat.max.kappa(Pred, Sp.occ)

Arguments

Pred

A vector of predicted probabilities

Sp.occ

A vector of binary observations of the species occurrence

Value

Return values for Cohen's Kappa for 99 thresholds at 0.01 increments.

Author(s)

Antoine Guisan antoine.guisan@unil.ch with contributions of Luigi Maiorano luigi.maiorano@gmail.com and Valeria Di Cola valeria.dicola@unil.ch.

References

Liu, C., P.M. Berry, T.P. Dawson, and R.G. Pearson. 2005. Selecting thresholds of occurrence in the prediction of species distributions. Ecography, 28, 385-393.

See Also

ecospat.meva.table, ecospat.max.tss, ecospat.plot.tss, ecospat.cohen.kappa, ecospat.plot.kappa

Examples

1
2
3
4
5
   
Pred <- ecospat.testData$glm_Agrostis_capillaris
Sp.occ <- ecospat.testData$Agrostis_capillaris
kappa100 <- ecospat.max.kappa(Pred, Sp.occ)
   

ecospat documentation built on Feb. 19, 2021, 5:07 p.m.