eemR: Tools for Pre-Processing Emission-Excitation-Matrix (EEM) Fluorescence Data

Provides various tools to calculate EEM fluorescence metrics and preprocess EEM for PARAFAC analysis.

Install the latest version of this package by entering the following in R:
install.packages("eemR")
AuthorPhilippe Massicotte [aut, cre]
Date of publication2016-08-29 14:16:11
MaintainerPhilippe Massicotte <pm@bios.au.dk>
LicenseGPL (>= 2)
Version0.1.4
https://github.com/PMassicotte/eemR

View on CRAN

Functions

absorbance Man page
eem Man page
eem_bind Man page
eem_biological_index Man page
eem_coble_peaks Man page
eem_cut Man page
eem_export_matlab Man page
eem_extract Man page
eem_extract_blank Man page
eem_fluorescence_index Man page
eem_humification_index Man page
eem_inner_filter_effect Man page
eem_names Man page
eem_names<- Man page
eem_raman_normalisation Man page
eem_read Man page
eem_remove_blank Man page
eem_remove_scattering Man page
eem_set_wavelengths Man page
plot.eemlist Man page
print.eemlist Man page
summary.eem Man page
summary.eemlist Man page

Files

inst
inst/extdata
inst/extdata/cary
inst/extdata/cary/scans_day_2
inst/extdata/cary/scans_day_2/blank.csv
inst/extdata/cary/scans_day_2/s1.csv
inst/extdata/cary/scans_day_1
inst/extdata/cary/scans_day_1/nano.csv
inst/extdata/cary/scans_day_1/sample1.csv
inst/extdata/cary/scans_day_1/sample3.csv
inst/extdata/cary/scans_day_1/sample2.csv
inst/extdata/shimadzu
inst/extdata/shimadzu/shimadzu.TXT
inst/extdata/aqualog
inst/extdata/aqualog/sample4.dat
inst/doc
inst/doc/eemR_intro.R
inst/doc/eemR_intro.html
inst/doc/parafac.html
inst/doc/eemR_intro.Rmd
inst/doc/introduction.R inst/doc/parafac.R
inst/doc/introduction.html
inst/doc/parafac.Rmd
inst/doc/introduction.Rmd
tests
tests/testthat.R
tests/testthat
tests/testthat/test-metrics.R tests/testthat/test-blank-correction.R
NAMESPACE
NEWS.md
data
data/absorbance.RData
R
R/eem_correction.R R/eem_metrics.R R/eem_utils.R R/eem_export.R R/eem_read.R R/absorbance.R
vignettes
vignettes/blank.rda
vignettes/ife.rda
vignettes/biblio.bib
vignettes/introduction.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/eem_biological_index.Rd man/eem_names-set.Rd man/eem_remove_scattering.Rd man/eem_coble_peaks.Rd man/eem_inner_filter_effect.Rd man/summary.eem.Rd man/eem_remove_blank.Rd man/eem_extract.Rd man/eem.Rd man/eem_raman_normalisation.Rd man/print.eemlist.Rd man/eem_names.Rd man/eem_fluorescence_index.Rd man/eem_humification_index.Rd man/plot.eemlist.Rd man/eem_cut.Rd man/summary.eemlist.Rd man/eem_bind.Rd man/eem_read.Rd man/eem_export_matlab.Rd man/eem_extract_blank.Rd man/absorbance.Rd man/eem_set_wavelengths.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.