elimCellDuplicates: Thin spatial points so that there is but one per raster cell

In enmSdmX: Species Distribution Modeling and Ecological Niche Modeling

Thin spatial points so that there is but one per raster cell

Description

This function thins spatial points such that no more than one point falls within each cell of a reference raster. If more than one point falls in a cell, the first point in the input data is retained unless the user specifies a priority for keeping points.

Usage

elimCellDuplicates(x, rast, longLat = NULL, priority = NULL)

Arguments

x	Points. This can be either a data.frame, matrix, SpatVector, or sf object.
rast	SpatRaster object.
longLat	Two-element character vector or two-element integer vector. If x is a data.frame, then this should be a character vector specifying the names of the fields in x or a two-element vector of integers that correspond to longitude and latitude (in that order). For example, c('long', 'lat') or c(1, 2). If x is a matrix, then this is a two-element vector indicating the column numbers in x that represent longitude and latitude. For example, c(1, 2). If x is an sf object then this is ignored.
priority	Either NULL, in which case for every cell with more than one point the first point in x is chosen, or a numeric or character vector indicating preference for some points over others when points occur in the same cell. There should be the same number of elements in priority as there are points in x. Priority is assigned by the natural sort order of priority. For example, for 3 points in a cell for which priority is c(2, 1, 3), the script will retain the second point and discard the rest. Similarly, if priority is c('z', 'y', 'x') then the third point will be chosen. Priorities assigned to points in other cells are ignored when thinning points in a particular cell.

Value

Object of class x.

Examples

# This example can take >10 second to run.

library(terra)
x <- data.frame(
    long=c(-90.1, -90.1, -90.2, 20),
    lat=c(38, 38, 38, 38), point=letters[1:4]
)
rast <- rast() # empty raster covering entire world with 1-degree resolution
elimCellDuplicates(x, rast, longLat=c(1, 2))
elimCellDuplicates(x, rast, longLat=c(1, 2), priority=c(3, 2, 1, 0))

enmSdmX documentation built on April 3, 2025, 7:50 p.m.