R/data.R

In enshuman: Human Gene Annotation Data from 'Ensembl'

#' Ensembl genes build GRCh38.111
#'
#' wget https://ftp.ensembl.org/pub/current/gtf/homo_sapiens/Homo_sapiens.GRCh38.111.gtf.gz
#'
#'
#' @format A data frame  with 41,016 rows and 7 variables:
#' \describe{
#'   \item{chrom}{chromosome}
#'   \item{gene_start}{genetic position of gene start}
#'   \item{gene_end}{genetic position of gene end}
#'   \item{gene_symbol}{the name of the gene}
#'   \item{biotype}{the biotype of the gene}
#'   \item{exon_chromstart}{genetic positions of exon start}
#'   \item{exon_chromend}{genetic position of exon end}
#'   }
"hg38"



#' Ensembl genes build GRCh37.87
#'
#' wget https://ftp.ensembl.org/pub/grch37/current/gtf/homo_sapiens/Homo_sapiens.GRCh37.87.gtf.gz
#'
#'
#' @format A data frame  with 55,882 rows and 7 variables:
#' \describe{
#'   \item{chrom}{chromosome}
#'   \item{gene_start}{genetic position of gene start}
#'   \item{gene_end}{genetic position of gene end}
#'   \item{gene_symbol}{The name of the gene}
#'   \item{biotype}{the biotype of the gene}
#'   \item{exon_chromstart}{genetic positions of exon start}
#'   \item{exon_chromend}{genetic position of exon end}
#'   }
"hg37"