Entropy Partitioning to Measure Diversity

AbdFreqCount | Abundance Frequency Count of a Community |

AllenH | Phylogenetic Entropy of a Community |

AlphaDiversity | Reduced-bias alpha diversity of a metacommunity |

AlphaEntropy | Reduced-bias alpha entropy of a metacommunity |

ArgumentOriginalName | Finds the original value (name of expression) of the argument... |

BetaDiversity | Reduced-bias beta diversity of a metacommunity |

BetaEntropy | Reduced-bias beta entropy of a metacommunity |

ChaoPD | Phylogenetic Diversity of a Community |

CheckentropartArguments | Checks the arguments of a function of the package entropart |

CommunityProfile | Diversity or Entropy Profile of a community |

Coverage | Sample coverage of a community |

Diversity | HCDT diversity of a community |

DivEst | Diversity Estimation of a metacommunity |

DivPart | Diversity Partition of a metacommunity |

DivProfile | Diversity Profile of a metacommunity |

Dqz | Similarity-based diversity of a community |

EightSpAbundance | Abundances of 8 species to run examples. |

EightSpTree | Functional tree with 8 species. |

Enq | Grassberger's expectation of n^q |

entropart-package | Entropy Partitioning to Measure Diversity |

EntropyCI | Entropy of Monte-Carlo simulated communities |

expq | Exponential of order q |

GammaDiversity | Reduced-bias gamma diversity of a metacommunity |

GammaEntropy | Reduced-bias gamma entropy of a metacommunity |

GenSimpson | Generalized Simpson's Entropy and Diversity |

Hqz | Similarity-based entropy of a community |

HqzBeta | Similarity-based beta entropy of a community |

Hurlbert | Hurlbert's Index and Explicit Diversity |

KLq | Generalized Kullback-Leibler divergence |

lnq | Logarithm of order q |

MCdiversity | Meta-Community diversity class. |

MCentropy | Meta-Community entropy class. |

mergeandlabel | Merge community data |

MergeMC | Manipulation of meta-communities |

MetaCommunity | Metacommunity class |

Optimal.Similarity | Optimal scale parameter to transform a distance matrix into a... |

Paracou618.dist | Functional distances between pairs of species of Paracou... |

Paracou618.Functional | Functional tree of species of Paracou field station plots 6... |

Paracou618.MC | Paracou field station plots 6 and 18, two 1-ha plots... |

Paracou618.Taxonomy | Taxonomy (Family - Genus - Species) of Paracou field station... |

PDFD | Phylogenetic Diversity / Functional Diversity of a Community |

PhyloApply | Apply a Function over a Phylogenetic Tree |

PhyloBetaEntropy | Phylogenetic Beta Entropy of a community |

PhyloDiversity | Phylogenetic Diversity of a Community |

PhyloEntropy | Phylogenetic Entropy of a community |

PhyloValue | Phylogenetic entropy of diversity. |

PPtree | Preprocessed Trees. |

Preprocess.MC | Preprocessing of metacommunity data |

Preprocess.Tree | Preprocessing of a phylogenetic tree |

Rao | Rao Quadratic Entropy of a Community |

rCommunity | Random Communities |

Richness | Number of species of a community |

Shannon | Shannon entropy of a community |

ShannonBeta | Shannon beta entropy of a community |

Simpson | Simpson entropy of a community |

SimpsonBeta | Simpson beta entropy of a community |

SimTest | SimTest class |

SpeciesDistribution | Species Distributions. |

Tsallis | Tsallis (HCDT) Entropy of a community |

TsallisBeta | Tsallis beta entropy of a community |

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