Man pages for epicR
Evaluation Platform in Chronic Obstructive Pulmonary Disease
| calc_event_stack_size | Calculate recommended event_stack_size for a given number of... |
| calibrate_COPD_inc | Solves stochastically for COPD incidence rate equation. |
| calibrate_explicit_mortality | Calibrates explicit mortality |
| calibrate_explicit_mortality2 | Calibrates explicit mortality by Amin |
| calibrate_smoking | Calibrates smoking |
| copy_configs_to_user | Copy default configs to user directory |
| epicR-config | epicR Configuration Management |
| epicR-package | 'epicR' package |
| estimate_memory_required | Estimate memory required for simulation |
| export_figures | Runs the model and exports an excel file with all output data |
| express_matrix | Express matrix. |
| get_agent_events | Returns all events of an agent. |
| get_agent_size_bytes | Returns the size of agent struct in bytes |
| get_all_events | Returns all events. |
| get_all_events_matrix | Returns a matrix containing all events |
| get_available_memory | Get available system memory (platform-specific) |
| get_default_model_input | Get the default model input (lazy initialization) |
| get_default_settings | Exports default settings |
| get_errors | Returns errors |
| get_event | Returns the events stack. |
| get_events_by_type | Returns all events of a certain type. |
| get_input | Returns a list of default model input values |
| get_inputs | Returns inputs |
| get_list_elements | Get list elements |
| get_n_events | Returns total number of events. |
| get_output | Main outputs of the current run. |
| get_output_ex | Extra outputs from the model |
| get_progress | Returns current simulation progress. |
| get_runtime_stats | Returns run time stats. |
| get_sample_output | Returns a sample output for a given year and gender. |
| get_settings | Returns current settings. |
| get_smith | Returns agent Smith. |
| get_user_config_dir | Get user config directory path |
| init_session | Initializes a model. Allocates memory to the C engine. |
| list_available_jurisdictions | List available config jurisdictions |
| mvrnormArma | Samples from a multivariate normal |
| report_COPD_by_ctime | Reports COPD related stats. |
| report_exacerbation_by_time | Reports exacerbation-related stats. |
| reset_model_input | Reset the cached model input |
| reset_user_configs | Reset user configs to package defaults |
| resume | Resumes running of model. |
| sanity_check | Basic tests of model functionality. Serious issues if the... |
| sanity_COPD | Basic COPD test. |
| set_input_var | Sets input variables. |
| set_settings_var | Sets model settings. |
| simulate | Convenience function: run simulation and return results |
| terminate_session | Terminates a session and releases allocated memory. |
| test_case_detection | Returns results of Case Detection strategies |
| user_config_exists | Check if user config exists |
| validate_config | Validate a config file |
| validate_COPD | Returns results of validation tests for COPD |
| validate_diagnosis | Returns results of validation tests for diagnosis |
| validate_exacerbation | Returns results of validation tests for exacerbation rates |
| validate_gpvisits | Returns results of validation tests for GP visits |
| validate_lung_function | Returns results of validation tests for lung function |
| validate_medication | Returns results of validation tests for medication module. |
| validate_mortality | Returns results of validation tests for mortality rate |
| validate_overdiagnosis | Returns results of validation tests for overdiagnosis |
| validate_payoffs | Returns results of validation tests for payoffs, costs and... |
| validate_population | Returns simulated vs. predicted population table and a plot |
| validate_smoking | Returns results of validation tests for smoking module. |
| validate_survival | Returns the Kaplan Meier curve comparing COPD and non-COPD |
| validate_symptoms | Returns results of validation tests for Symptoms |
| validate_treatment | Returns results of validation tests for Treatment |
