| BarabasiAlbert | Function to generate a Barabasi-Albert network |
| black | Black's measles seroprevalence data. |
| burnett | Burnett's Parasitoid-Host data. |
| ccs | UK measles CCS data. |
| chainSIR | Gradient-function for the chain-SIR model |
| cholera | Dacca cholera death data. |
| coyne | Gradient-function for Coyne et al's rabies model |
| dalziel | Measles incidence across 40 US cities |
| ebola | Sierra-Leone Ebola 2015 data. |
| ferrari | Ferrari et al. 2005 outbreak data. |
| filipendula | Filipendula rust data. |
| fiv | FIV infection in cats. |
| flowField | Flowfield |
| flu | Boarding school influenza data. |
| gillespie | Gillespie exact algorithm |
| gm | Defoliated by gypsy moth each in northeast US 1975-2002. |
| gonnet | De et al. 2004 gonorrhea contact matrix |
| gra | Euthamia graminifolia rust data. |
| Icelandflu | Monthly incidence of influenza-like illness in Iceland... |
| integrandpc | Auxillary function used by llik.pc |
| litter | Bordetella bronchiseptica in rabbit kittens. |
| llik.cb | Negative log-likelihood function for the chain-binomial model |
| llik.pc | Function to estimate parameters for the picewise-constant... |
| magono | Massachusetts gonorrhea data. |
| May.app | Launch a shiny-app simulating May's Parasitoid-host Model... |
| meas | Bi-weekly measles incidence in London from 1944-65. |
| mossong | POLYMOD contact-rate data by Age. |
| NB | The Nicholson-Bailey model |
| NetworkSIR | Function to simulate an epidemic on a network |
| niamey | Weekly measles incidence from 2003-04 in Niamey, Niger. |
| niamey_daily | Day of appearance of each measles case from 2003-04 outbreak... |
| orv.app | Launch a shiny-app to study outbreak-response vaccination... |
| pagiard | Weekly incidence of giardia in Pennsylvania between 2006 and... |
| paili | Weekly deaths from Influenza-like illness in Pennsylvania... |
| palymes | Weekly incidence of Lymes disease in Pennsylvania between... |
| pameasle | Weekly incidence of measles in Pennsylvania between 1928 and... |
| pertcop | Weekly whooping cough incidence from 1900-1937 in Copenhagen,... |
| peru | Rubella in Peru data. |
| plot.cm | Function to plot an object of class CM |
| plot.netSIR | Function to plot a netSIR object |
| r0fun | Function to calculate R0 from a contact matrix |
| rabbit | Rabbit _Bordetella brochiseptica_ data. |
| rabies | Raccoon rabies data. |
| retrospec | Function to predict efficacy of outbreak-response vaccination... |
| ringlattice | Function to generate a ring lattice |
| SEIR.app | Launch a shiny-app simulating the seasonal SEIR model |
| seirmod | Gradient-function for the SEIR model |
| seirmod2 | Gradient-function for the forced SEIR model |
| SEIRS.app | Launch a shiny-app simulating the SEIRS model |
| SH9 | Daily measures of malaria infected mice. |
| silene2 | Antler smut on wild campion. |
| sim.cb | Function to simulate the chain-binomial model |
| SimTsir | Function to simulate the stochastic TSIR |
| SimTsir2 | Function to simulate the seasonally-forced TSIR |
| siragemod | Gradient-function for the age-structured SIR model with... |
| SIR.app | Launch a shiny-app simulating the SIR model |
| sirmod | Gradient-function for the SIR model |
| sirwmod | Gradient-function for the SIRWS model |
| sivmod | Gradient-function for the SIR model with outbreak-response... |
| summary.cm | Function to calculate the degree distribution for an object... |
| summary.netSIR | Function to summarize a netSIR object |
| tau | Gillespie tau-leap algorithm |
| TSIR.app | Launch a shiny-app simulating TSIR model |
| TSIRllyap | Function to calculate the local Lyapunov exponents for the... |
| TSIRlyap | Function to do Lyapunov exponent calculations from a TSIR... |
| tydiphtheria | Weekly incidence of diphtheria in Philadelphia between 1914... |
| tymeasles | Weekly incidence of measles in Philadelphia between 1914 and... |
| tyscarlet | Weekly incidence of scarlet fever in Philadelphia between... |
| tywhooping | Weekly incidence of whooping cough in Philadelphia between... |
| usflu | US 1975/76 ILI data. |
| WattsStrogatz | Function to generate a Watts-Strogats network |
