Man pages for epitrix
Small Helpers and Tricks for Epidemics Analysis

AR2R0Title Calculate basic reproduction number from attack rate
clean_labelsStandardise labels
empirical_incubation_distExtract empirical incubation period distribution from...
fit_disc_gammaFit discretised distributions using ML
fit_gamma_incubation_distFit discrite gamma distribution to incubation periods
gamma_toolsReparameterise Gamma distributions
hash_namesAnonymise data using scrypt
R02ARTitle Calculate attack rate from basic reproduction number
R02herd_immunity_thresholdTitle Calculate herd immunity threshold from basic...
r2R0Transform a growth rate into a reproduction number
sim_linelistSimulate simple linelist data
epitrix documentation built on Jan. 14, 2023, 1:16 a.m.