Small Helpers and Tricks for Epidemics Analysis

AR2R0 | Title Calculate basic reproduction number from attack rate |

clean_labels | Standardise labels |

empirical_incubation_dist | Extract empirical incubation period distribution from... |

fit_disc_gamma | Fit discretised distributions using ML |

fit_gamma_incubation_dist | Fit discrite gamma distribution to incubation periods |

gamma_tools | Reparameterise Gamma distributions |

hash_names | Anonymise data using scrypt |

R02AR | Title Calculate attack rate from basic reproduction number |

R02herd_immunity_threshold | Title Calculate herd immunity threshold from basic... |

r2R0 | Transform a growth rate into a reproduction number |

sim_linelist | Simulate simple linelist data |

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