View source: R/aspatial_siri_seasons.R
siri_model_summer | R Documentation |
Simulate a Mycoplasma gallisepticum outbreak during the breeding season day-by-day in a population of house finches (Haemorhous mexicanus). Uses a SIRI model (Susceptible-Infected 1- Recovered-Infected 2+) and includes demographic stochasticity in fecundity, mortality, and infection.
siri_model_summer(inputs)
inputs |
A nested list with named elements:
|
The function can also handle the case in which there are no infected individuals. The principal difference between this function and the one for simulating an outbreak in the non-breeding season is that this one includes fecundity.
An abundance matrix with populations
columns and
stages*compartments
rows, updated from the segment_abundance
input in
inputs
according to demography and disease dynamics.
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