addPhylo: addPhylo

In epm: EcoPhyloMapper

addPhylo

Description

Add a phylogeny to epmGrid object.

Usage

addPhylo(x, tree, replace = FALSE, verbose = FALSE)

Arguments

x	object of class epmGrid
tree	a phylogeny of class phylo, or a set of trees of class multiPhylo
replace	boolean; if a tree is already a part of x, should it be replaced?
verbose	if TRUE, list out all species that are dropped/excluded, rather than counts.

Details

If any species in the phylogeny are not found in the epmGrid geographical data, then those species will be dropped from the phylogeny, and a warning will be issued.

If providing a set of trees as a multiPhylo object, it is expected that all trees have the same tips.

Value

object of class epmGrid, with a phylo object as the list element named phylo.

Author(s)

Pascal Title

Examples

tamiasEPM
tamiasTree

addPhylo(tamiasEPM, tamiasTree)

epm documentation built on April 4, 2025, 1:42 a.m.