epoc: EPoC (Endogenous Perturbation analysis of Cancer)

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Estimates sparse matrices A or G using fast lasso regression from mRNA transcript levels Y and CNA profiles U. Two models are provided, EPoC A where AY + U + R = 0 and EPoC G where Y = GU + E, the matrices R and E are so far treated as noise. For details see the reference and the manual page of `lassoshooting'.

Author
Rebecka Jornsten, Tobias Abenius, Sven Nelander
Date of publication
2013-08-26 17:51:58
Maintainer
Tobias Abenius <Tobias.Abenius@Chalmers.se>
License
LGPL-3
Version
0.2.5-1

View on CRAN

Man pages

epoc
EPoC
epoc.bootstrap
epoc.bootstrap
epoc.survival
epoc.survival
epoc.validation
epoc.validation
plapply
Parallell list apply
plot.EPoC.validation
Plot model validation criteria
plot.modelsel
Plot BIC, Mallow's Cp and lambda
synth
Blinded cancer mRNA, CNA and survival data

Files in this package

epoc
epoc/NAMESPACE
epoc/data
epoc/data/datalist
epoc/data/synth.rda
epoc/R
epoc/R/epoc.R
epoc/R/zzz.R
epoc/MD5
epoc/DESCRIPTION
epoc/ChangeLog
epoc/man
epoc/man/epoc.validation.Rd
epoc/man/plot.modelsel.Rd
epoc/man/epoc.bootstrap.Rd
epoc/man/epoc.Rd
epoc/man/plapply.Rd
epoc/man/synth.Rd
epoc/man/epoc.survival.Rd
epoc/man/plot.EPoC.validation.Rd
epoc/INDEX