Man pages for epos
Epilepsy Ontologies' Similarities
| calcCosine | Calculate the cosine similarity metric for two lists a and b |
| calcDice | Calculate the dice similarity metric for two lists a and b |
| calcDSEA | Calculate dsea scores of one list in comparison to reference... |
| calcEnrichment | Calculate enrichment of one list in comparison to reference... |
| calcJaccard | Calculate the jaccard coefficient for two lists a and b |
| cosine | Calculate cosine similarity metric |
| createBaseTable | Main function to call everything and produce the results |
| createDashVectorForATC | Creates a vector with an X at each position where a drug from... |
| createJaccardPlotDBMeSH | Creates the plot for all jaccard coefficients amongst the... |
| createJaccardPlotMeSHFive | Creates the plot for all jaccard coefficients amongst the... |
| createNeuroTable | Create the final resulting data frame |
| createTanimotoBaseline | Creates the plot for all jaccard coefficients amongst the... |
| dice | Calculate dice similarity metric |
| doFullPlot | Does the full plot on one page |
| drawVenn4 | Create quad Venn Diagramm for overlapping concepts between... |
| drawVenn4Doc | Create quintuple Venn Diagramm for shared documents with... |
| drawVenn4DrugDoc | Create quad Venn Diagramm for shared documents with... |
| drawVenn4Syn | Create quad Venn Diagramm for shared synonyms between EpSO,... |
| drawVenn5 | Create quintuple Venn Diagramm for overlapping concepts... |
| drawVenn5Doc | Create quintuple Venn Diagramm for shared documents between... |
| drawVenn5DrugDoc | Create quintuple Venn Diagramm for shared documents with... |
| drawVenn5Syn | Create quintuple Venn Diagramm for shared synonyms between... |
| drawVennGrid | Create plot_grid from multiple plots |
| filterApprovedDrugs | Filter a given list of drug names for having an ATC code, if... |
| filterNeuroDrugs | Filter a given list of drug names for having an ATC code... |
| genDictListFromRawFreq | Clears object that was loaded from harddrive into a list of... |
| getRefAll | Retrieve the list of drugs from the union of all reference... |
| getTermMatrix | Receives a sorted hashmap with found entities from a... |
| jaccard | Calculate jaccard similarity metric for two sets a and b |
| plotDSEA | Plotting functions for DSEA lists |
| plotEnrichment | Plotting functions for enrichment lists |
| printTop10Drugs | Print Top 10 Drugs |
| rawDrugNamesCoOcEPILONT | List drug terms with their frequency co-occurring with terms... |
| rawDrugNamesCoOcEPISEM | List drug terms with their frequency co-occurring with terms... |
| rawDrugNamesCoOcEpSO | List drug terms with their frequency co-occurring with terms... |
| rawDrugNamesCoOcESSO | List drug terms with their frequency co-occurring with terms... |
| rawDrugNamesCoOcFENICS | List drug terms with their frequency co-occurring with terms... |
| readAtcMapIntoHashMapAtcCodesAtcNames | Processes the input file db-atc.map to form a HashMap... |
| readAtcMapIntoHashMapDrugNamesAtcCodes | Processes the input file db-atc.map to form a HashMap... |
| readSecondLevelATC | Read the second level ATC classes from the file... |
| sortTableByRefMatches | Sort table by scoring for each row |
