Description Usage Arguments Value Examples
Print Top 10 Drugs
1 | printTop10Drugs(neuroepso, neuroesso, neuroepi, neuroepisem, neurofenics)
|
neuroepso |
Ranked list of drug names co-occurring with EpSO |
neuroesso |
Ranked list of drug names co-occurring with ESSO |
neuroepi |
Ranked list of drug names co-occurring with EPILONT |
neuroepisem |
Ranked list of drug names co-occurring with EPISEM |
neurofenics |
Ranked list of drug names co-occurring with FENICS |
data frame with top 10 drugs for each ontology
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 | utils::data(rawDrugNamesCoOcEpSO, package="epos")
utils::data(rawDrugNamesCoOcESSO, package="epos")
utils::data(rawDrugNamesCoOcEPILONT, package="epos")
utils::data(rawDrugNamesCoOcEPISEM, package="epos")
utils::data(rawDrugNamesCoOcFENICS, package="epos")
atchashda <-
readAtcMapIntoHashMapDrugNamesAtcCodes(
system.file("extdata", "db-atc.map", package = "epos"), "\t")
atchashaa <-
readAtcMapIntoHashMapAtcCodesAtcNames(
system.file("extdata", "db-atc.map", package = "epos"), "\t")
atchashsec <-
readSecondLevelATC(
system.file("extdata", "atc-secondlevel.map", package = "epos"), "\t")
epso <- rawDrugNamesCoOcEpSO
neuroepso <- filterNeuroDrugs(epso, atchashda)
esso <- rawDrugNamesCoOcESSO
neuroesso <- filterNeuroDrugs(esso, atchashda)
epi <- rawDrugNamesCoOcEPILONT
neuroepi <- filterNeuroDrugs(epi, atchashda)
episem <- rawDrugNamesCoOcEPISEM
neuroepisem <- filterNeuroDrugs(episem, atchashda)
fenics <- rawDrugNamesCoOcFENICS
neurofenics <- filterNeuroDrugs(fenics, atchashda)
top10table <- printTop10Drugs(neuroepso, neuroesso, neuroepi, neuroepisem, neurofenics)
## Not run:
print(xtable::xtable(top10table, type = "latex"),
file = "top10table.tex")
## End(Not run)
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