Likelihood for mixtures with related contributors based on Familias
Description
Likelihood for mixtures with related contributors based on Familias
. For a general description
of the problem, see paraMix
. As opposed to paraMix
this function uses the R version
of Familias
for likelihood calculation and therefore thetacorrection, mutation models and silent allele frequencies
(but not Xchromosomes or simulation)
are accomodated.
Usage
1 2 3 4 5 
Arguments
x 

R 
Integers, mixture. 
id.U 
List of unknown contributors (e.g.,suspect(s)). 
id.V 
Integers indicating typed noncontributors. 
partialmarker 
A 
theta 
Real in [0,1] 
mutationRateFemale 
See 
mutationRateMale 
See 
mutationModelFemale 
See 
mutationModelMale 
See 
mutationRangeFemale 
See 
mutationRangeMale 
See 
silentFrequency 
Real in [0,1]. 
check 
If TRUE check of input is performed and calculations stop if they are likely to take too much time. 
Details
See paraMix
.
Value
x 

likelihod 
The likelood Pr(R,T,VH) 
allLikelihoods 
Terms adding to above Pr(R,T,VH) 
Author(s)
Thore Egeland <Thore.Egeland@nmbu.no>
References
Egeland et al (2013)
See Also
paraMix
Examples
1 2 3 
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