AlphaRep | Alpha repeatability |
BayesianCalculateMatrix | Calculate Covariance Matrix from a linear model fitted with... |
BootstrapR2 | R2 confidence intervals by bootstrap resampling |
BootstrapRep | Bootstrap analysis via resampling |
BootstrapStat | Non-Parametric population samples and statistic comparison |
CalcAVG | Calculates mean correlations within- and between-modules |
CalcEigenVar | Integration measure based on eigenvalue dispersion |
CalcICV | Calculates the ICV of a covariance matrix. |
CalcR2 | Mean Squared Correlations |
CalcR2CvCorrected | Corrected integration value |
CalcRepeatability | Parametric per trait repeatabilities |
CalculateMatrix | Calculate Covariance Matrix from a linear model fitted with... |
Center2MeanJacobianFast | Centered jacobian residuals |
ComparisonMap | Generic Comparison Map functions for creating parallel list... |
CreateHypotMatrix | Creates binary correlation matrices |
DeltaZCorr | Compare matrices via the correlation between response vectors |
dentus | Example multivariate data set |
dentus.tree | Tree for dentus example species |
DriftTest | Test drift hypothesis |
EigenTensorDecomposition | Eigentensor Decomposition |
evolqg | EvolQG |
ExtendMatrix | Control Inverse matrix noise with Extension |
JacobianArray | Local Jacobian calculation |
KrzCor | Compare matrices via Krzanowski Correlation |
KrzProjection | Compare matrices via Modified Krzanowski Correlation |
KrzSubspace | Krzanowski common subspaces analysis |
KrzSubspaceBootstrap | Quasi-Bayesian Krzanowski subspace comparison |
KrzSubspaceDataFrame | Extract confidence intervals from KrzSubspaceBootstrap |
LModularity | L Modularity |
LocalShapeVariables | Local Shape Variables |
MantelCor | Compare matrices via Mantel Correlation |
MantelModTest | Test single modularity hypothesis using Mantel correlation |
MatrixCompare | Matrix Compare |
MatrixDistance | Matrix distance |
MeanMatrix | Mean Covariance Matrix |
MeanMatrixStatistics | Calculate mean values for various matrix statistics |
MINT | Modularity and integration analysis tool |
MonteCarloR2 | R2 confidence intervals by parametric sampling |
MonteCarloRep | Parametric repeatabilities with covariance or correlation... |
MonteCarloStat | Parametric population samples with covariance or correlation... |
MultiMahalanobis | Calculate Mahalonabis distance for many vectors |
MultivDriftTest | Multivariate genetic drift test for 2 populations |
Normalize | Normalize and Norm |
OverlapDist | Distribution overlap distance |
Partition2HypotMatrix | Create binary hypothesis |
PCAsimilarity | Compare matrices using PCA similarity factor |
PCScoreCorrelation | PC Score Correlation Test |
PhyloCompare | Compares sister groups |
PhyloMantel | Mantel test with phylogenetic permutations |
PhyloW | Calculates ancestral states of some statistic |
PlotKrzSubspace | Plot KrzSubspace boostrap comparison |
PlotRarefaction | Plot Rarefaction analysis |
PlotTreeDriftTest | Plot results from TreeDriftTest |
PrintMatrix | Print Matrix to file |
ProjectMatrix | Project Covariance Matrix |
RandCorr | Random correlation matrix |
RandomMatrix | Random matrices for tests |
RandomSkewers | Compare matrices via RandomSkewers |
Rarefaction | Rarefaction analysis via resampling |
RarefactionStat | Non-Parametric rarefacted population samples and statistic... |
ratones | Linear distances for five mouse lines |
RelativeEigenanalysis | Relative Eigenanalysis |
RemoveSize | Remove Size Variation |
RevertMatrix | Revert Matrix |
RiemannDist | Matrix Riemann distance |
Rotate2MidlineMatrix | Midline rotate |
RSProjection | Random Skewers projection |
SingleComparisonMap | Generic Single Comparison Map functions for creating parallel... |
SRD | Compare matrices via Selection Response Decomposition |
TestModularity | Test modularity hypothesis |
TPS | TPS transform |
TreeDriftTest | Drift test along phylogeny |
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