exp2flux: Convert Gene EXPression Data to FBA FLUXes

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For a given metabolic model with well formed Gene-Protein-Reaction (GPR) associations and an expressionSet with their associated gene expression values, this package converts gene expression values to the FBA boundaries for each reaction based in the boolean rules described in its associated GPR.

Author
Daniel Osorio[aut,cre], Kelly Botero[aut,cre], Janneth Gonzalez[aut], Andres Pinzon[aut]
Date of publication
2016-10-11 12:42:48
Maintainer
Daniel Osorio <dcosorioh@unal.edu.co>
License
GPL-2
Version
0.1

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Man pages

exp2flux
Convert gene expression data to FBA fluxes
fluxDifferences
Report the fold change of fluxes between two models
plotDifferences
Plot the fold change of fluxes between two models into a...

Files in this package

exp2flux
exp2flux/NAMESPACE
exp2flux/R
exp2flux/R/fluxDifferences.R
exp2flux/R/plotDifferences.R
exp2flux/R/exp2flux.R
exp2flux/README.md
exp2flux/MD5
exp2flux/DESCRIPTION
exp2flux/man
exp2flux/man/plotDifferences.Rd
exp2flux/man/exp2flux.Rd
exp2flux/man/fluxDifferences.Rd