ape2time: Convert tree from 'phylo' format (ape) to event time format.
In expoTree: Calculate density dependent likelihood of a phylogenetic tree
Description
Usage
Arguments
Details
Author(s)
See Also
Examples
Description
Extract branching and sampling times from a tree in the native ape format.
Usage
1
ape2time(tree, eps = 0.0)
Arguments
tree
Tree in 'phylo' format.
eps
Error tolerance for the present time (see Details).
Details
In some cases R doesn't handle mathematical operations quite well and it can
happen that tip ages are calculated as 10^-14 or similar instead of 0.0.
'eps' defines the tolerance for what is considered extant at the present
(tip age < eps).
Author(s)
Gabriel E Leventhal
See Also
Examples
1
2
expoTree documentation built on May 29, 2017, 3:49 p.m.
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Description Usage Arguments Details Author(s) See Also Examples
Description
Extract branching and sampling times from a tree in the native ape format.
Usage
1 | ape2time(tree, eps = 0.0)
|
Arguments
tree |
Tree in 'phylo' format. |
eps |
Error tolerance for the present time (see Details). |
Details
In some cases R doesn't handle mathematical operations quite well and it can happen that tip ages are calculated as 10^-14 or similar instead of 0.0. 'eps' defines the tolerance for what is considered extant at the present (tip age < eps).
Author(s)
Gabriel E Leventhal
See Also
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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