falcon: Finding Allele-Specific Copy Number in Next-Generation Sequencing Data

This is a method for Allele-specific DNA Copy Number Profiling using Next-Generation Sequencing. Given the allele-specific coverage at the variant loci, this program segments the genome into regions of homogeneous allele-specific copy number. It requires, as input, the read counts for each variant allele in a pair of case and control samples. For detection of somatic mutations, the case and control samples can be the tumor and normal sample from the same individual.

AuthorHao Chen and Nancy R. Zhang
Date of publication2016-04-21 08:20:42
MaintainerHao Chen <hxchen@ucdavis.edu>
LicenseGPL (>= 2)
Version0.2

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Files

falcon
falcon/src
falcon/src/falcon.c
falcon/NAMESPACE
falcon/data
falcon/data/Example.rda
falcon/R
falcon/R/falcon_sub.r
falcon/R/script_basic.r
falcon/R/falcon.r
falcon/MD5
falcon/DESCRIPTION
falcon/man
falcon/man/tauhat.Rd falcon/man/pos.Rd falcon/man/getASCN.Rd falcon/man/readMatrix.Rd falcon/man/falcon.Rd falcon/man/getChangepoints.Rd falcon/man/view.Rd

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