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This is a method for Allele-specific DNA Copy Number Profiling using Next-Generation Sequencing. Given the allele-specific coverage at the variant loci, this program segments the genome into regions of homogeneous allele-specific copy number. It requires, as input, the read counts for each variant allele in a pair of case and control samples. For detection of somatic mutations, the case and control samples can be the tumor and normal sample from the same individual.
Package details |
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Author | Hao Chen and Nancy R. Zhang |
Maintainer | Hao Chen <hxchen@ucdavis.edu> |
License | GPL (>= 2) |
Version | 0.2 |
Package repository | View on CRAN |
Installation |
Install the latest version of this package by entering the following in R:
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