fastLSU: Fast Linear Step Up Procedure of Benjamini–Hochberg FDR Method for Huge-Scale Testing Problems

An efficient algorithm to apply the Benjamini–Hochberg Linear Step Up FDR controlling procedure in huge-scale testing problems (proposed in Vered Madar and Sandra Batista(2016) <DOI:10.1093/bioinformatics/btw029>). Unlike "BH" method, the package does not require any p value ordering. Besides, it permits separating p values arbitrarily into computationally feasible chunks of arbitrary size and produces the same results as those from applying linear step up BH procedure to the entire set of tests.

Getting started

Package details

AuthorXikun Han <[email protected]>, Vered Madar <[email protected]> and Sandra Batista <[email protected]>
MaintainerXikun Han <[email protected]>
Package repositoryView on CRAN
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fastLSU documentation built on May 29, 2017, 10:10 p.m.