fastLSU: Fast Linear Step Up Procedure of Benjamini–Hochberg FDR Method for Huge-Scale Testing Problems

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An efficient algorithm to apply the Benjamini–Hochberg Linear Step Up FDR controlling procedure in huge-scale testing problems (proposed in Vered Madar and Sandra Batista(2016) <DOI:10.1093/bioinformatics/btw029>). Unlike "BH" method, the package does not require any p value ordering. Besides, it permits separating p values arbitrarily into computationally feasible chunks of arbitrary size and produces the same results as those from applying linear step up BH procedure to the entire set of tests.

Author
Xikun Han <hanxikun2014@163.com>, Vered Madar <vered.madar@gmail.com> and Sandra Batista <sbatista@cs.princeton.edu>
Date of publication
2016-09-20 09:21:34
Maintainer
Xikun Han <hanxikun2014@163.com>
License
GPL-2
Version
0.1.0

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Man pages

fastLSU
Fast Linear Step Up Procedure

Files in this package

fastLSU
fastLSU/NAMESPACE
fastLSU/R
fastLSU/R/fastLSU.R
fastLSU/MD5
fastLSU/DESCRIPTION
fastLSU/man
fastLSU/man/fastLSU.Rd