getLocusCPT | R Documentation |
getLocusCPT: a function for obtaining the coditional probability table from a specific locus.
getLocusCPT(bn, locus, lumpingParameter = NULL, renorm = "row-wise")
bn |
A bayesian network for pedigree object with information of the genotyped members. The ped object must be in Familias format. |
locus |
Specified locus. |
lumpingParameter |
Used for stepwise mutational model. |
renorm |
If "row-wise" is selected, zero probability is assigned for transitions out of range. |
A bayesian network based on pedigree evidence and QP definition.
pbn <- initBN(toyped)
bnet <- buildBN(pbn,QP=3)
bn1 <- buildCPTs(bnet)
locCPT <- getLocusCPT(bn1,"M1")
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