add_var: Add columns 'lx/ly', 'QX/QY', 'index', 'col/row',...

In fgeo.tool: Import and Manipulate 'ForestGEO' Data

Add columns lx/ly, QX/QY, index, col/row, hectindex, quad, gx/gy.

Description

These functions add columns to position trees in a forest plot. They work with ViewFullTable, tree and stem tables. From the input table, most functions use only the gx and gy columns (or equivalent columns). The exception is the function add_gxgy() which inputs quadrat information. If your data lacks some important column, an error message will inform you which column is missing.

Usage

add_lxly(data, gridsize = 20, plotdim = NULL)

add_qxqy(data, gridsize = 20, plotdim = NULL)

add_index(data, gridsize = 20, plotdim = NULL)

add_col_row(data, gridsize = 20, plotdim = NULL)

add_hectindex(data, gridsize = 20, plotdim = NULL)

add_quad(data, gridsize = 20, plotdim = NULL, start = NULL, width = 2)

add_gxgy(data, gridsize = 20, start = 0)

Arguments

data	A ForestGEO-like dataframe: A ViewFullTable, tree or stem table.
gridsize	The gridsize of the census plot (commonly 20 m).
plotdim	The global dimensions of the census plot (i.e. the maximum possible values of gx and gy).
start	Defaults to label the first quadrat as "0101". Use 0 to label it as "0000" instead.
width	Number; width to pad the labels of plot-columns and -rows.

Details

These functions are adapted from the CTFS R Package.

Value

For any given var, a function add_var() returns a modified version of the input dataframe, with the additional variable(s) var.

See Also

Other functions to add columns to dataframes: add_status_tree(), add_subquad()

Other functions for ForestGEO data: add_status_tree(), add_subquad()

Other functions for fgeo census: add_status_tree(), guess_plotdim(), pick_drop

Other functions for fgeo vft: add_status_tree(), add_subquad(), guess_plotdim(), pick_drop

Examples

# styler: off
x <- tribble(
    ~gx,    ~gy,
      0,      0,
     50,     25,
  999.9, 499.95,
   1000,    500
)
# styler: on

# `gridsize` has a common default; `plotdim` is guessed from the data
add_lxly(x)

gridsize <- 20
plotdim <- c(1000, 500)

add_qxqy(x, gridsize, plotdim)

add_index(x, gridsize, plotdim)

add_hectindex(x, gridsize, plotdim)

add_quad(x, gridsize, plotdim)

add_quad(x, gridsize, plotdim, start = 0)

# `width` gives the nuber of digits to pad the label of plot-rows and
# plot-columns, e.g. 3 pads plot-rows with three zeros and plot-columns with
# an extra trhree zeros, resulting in a total of 6 zeros.
add_quad(x, gridsize, plotdim, start = 0, width = 3)

add_col_row(x, gridsize, plotdim)


# From `quadrat` or `QuadratName` --------------------------------------
# styler: off
x <- tribble(
  ~QuadratName,
        "0001",
        "0011",
        "0101",
        "1001"
)
# styler: on

# Output `gx` and `gy` ---------------

add_gxgy(x)

assert_is_installed("fgeo.x")
# Warning: The data may already have `gx` and `gx` columns
gxgy <- add_gxgy(fgeo.x::tree5)
select(gxgy, matches("gx|gy"))

# Output `col` and `row` -------------

# Create columns `col` and `row` from `QuadratName` with `tidyr::separate()`
# The argument `sep` lets you separate `QuadratName` at any positon
## Not run: 
tidyr_is_installed <- requireNamespace("tidyr", quietly = TRUE)
stringr_is_installed <- requireNamespace("stringr", quietly = TRUE)

if (tidyr_is_installed && stringr_is_installed) {
  library(tidyr)
  library(stringr)

  vft <- tibble(QuadratName = c("0001", "0011"))
  vft

  separate(
    vft,
    QuadratName,
    into = c("col", "row"),
    sep = 2
  )

  census <- select(fgeo.x::tree5, quadrat)
  census

  census$quadrat <- str_pad(census$quadrat, width = 4, pad = 0)

  separate(
    census,
    quadrat,
    into = c("col", "row"),
    sep = 2,
    remove = FALSE
  )
}

## End(Not run)

fgeo.tool documentation built on May 29, 2024, 5:30 a.m.