phyloseq2meco: Transform the 'phyloseq' object of 'phyloseq' package to...

In file2meco: Transform Files to 'microtable' Object with 'microeco' Package

Transform the 'phyloseq' object of 'phyloseq' package to 'microtable' object of 'microeco' package.

Description

Transform the 'phyloseq' object of 'phyloseq' package to 'microtable' object of 'microeco' package.

Usage

phyloseq2meco(physeq, ...)

Arguments

physeq	a phyloseq object <doi:10.1371/journal.pone.0061217>.
...	parameter passed to microtable$new function of microeco package, such as auto_tidy parameter.

Value

microtable object.

Examples

## Not run: 
library(phyloseq)
data("GlobalPatterns")
phyloseq2meco(GlobalPatterns)

## End(Not run)

file2meco documentation built on April 4, 2025, 12:32 a.m.