tests/testthat/_snaps/statistical_correctness.md

Solvers return equivalent solutions with POLYMOD data

Code
  epi_outcome_iterative
Output
    demo_grp       susc_grp susceptibility p_infected
  1   [0,20)      immunised           0.10 0.02979109
  2  [20,40)      immunised           0.10 0.02279411
  3      40+      immunised           0.10 0.01603771
  4   [0,20) part-immunised           0.55 0.15324273
  5  [20,40) part-immunised           0.55 0.11910648
  6      40+ part-immunised           0.55 0.08508340
  7   [0,20)    susceptible           1.00 0.26098610
  8  [20,40)    susceptible           1.00 0.20592640
  9      40+    susceptible           1.00 0.14928409
Code
  epi_outcome_newton
Output
    demo_grp       susc_grp susceptibility p_infected
  1   [0,20)      immunised           0.10 0.02979101
  2  [20,40)      immunised           0.10 0.02279407
  3      40+      immunised           0.10 0.01603768
  4   [0,20) part-immunised           0.55 0.15324236
  5  [20,40) part-immunised           0.55 0.11910629
  6      40+ part-immunised           0.55 0.08508329
  7   [0,20)    susceptible           1.00 0.26098551
  8  [20,40)    susceptible           1.00 0.20592609
  9      40+    susceptible           1.00 0.14928389

Newton solver is correct in complex case

Code
  epi_outcome
Output
      demo_grp   susc_grp susceptibility p_infected
  1 demo_grp_1 susc_grp_1              1  0.4656377
  2 demo_grp_2 susc_grp_1              1  0.4636757
  3 demo_grp_3 susc_grp_1              1  0.3987979
  4 demo_grp_4 susc_grp_1              1  0.3364829
  5 demo_grp_5 susc_grp_1              1  0.2469828
  6 demo_grp_6 susc_grp_1              1  0.1485668

Iterative solver is correct in complex case

Code
  epi_outcome
Output
      demo_grp   susc_grp susceptibility p_infected
  1 demo_grp_1 susc_grp_1              1  0.4656377
  2 demo_grp_2 susc_grp_1              1  0.4636758
  3 demo_grp_3 susc_grp_1              1  0.3987979
  4 demo_grp_4 susc_grp_1              1  0.3364829
  5 demo_grp_5 susc_grp_1              1  0.2469827
  6 demo_grp_6 susc_grp_1              1  0.1485668


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finalsize documentation built on May 29, 2024, 3:33 a.m.