predict.modeler: Predict an object of class 'modeler'

In flexFitR: Flexible Non-Linear Least Square Model Fitting

Predict an object of class modeler

Description

Generate model predictions from an object of class modeler. This function allows for flexible prediction types, including point predictions, area under the curve (AUC), first or second order derivatives, and functions of the parameters.

Usage

## S3 method for class 'modeler'
predict(
  object,
  x = NULL,
  id = NULL,
  type = c("point", "auc", "fd", "sd"),
  se_interval = c("confidence", "prediction"),
  n_points = 1000,
  formula = NULL,
  metadata = FALSE,
  parallel = FALSE,
  workers = NULL,
  ...
)

Arguments

object	An object of class modeler, typically the result of calling the modeler() function.
x	A numeric value or vector specifying the points at which predictions are made. For type = "auc", x must be a vector of length 2 that specifies the interval over which to calculate the AUC.
id	Optional unique identifier to filter predictions by a specific group. Default is NULL.
type	A character string specifying the type of prediction. Default is "point". "point" Predicts the value of y for the given x. "auc" Calculates the area under the curve (AUC) for the fitted model over the interval specified by x. "fd" Returns the first derivative (rate of change) of the model at the given x value(s). "sd" Returns the second derivative of the model at the given x value(s).
se_interval	A character string specifying the type of interval for standard error calculation. Options are "confidence" (default) or "prediction". Only works with "point" estimation.
n_points	An integer specifying the number of points used to approximate the area under the curve (AUC) when type = "auc". Default is 1000.
formula	A formula specifying a function of the parameters to be estimated (e.g., ~ b * 500). Default is NULL.
metadata	Logical. If TRUE, metadata is included with the predictions. Default is FALSE.
parallel	Logical. If TRUE the prediction is performed in parallel. Default is FALSE. Use only when a large number of groups are being analyzed and x is a grid of values.
workers	The number of parallel processes to use. parallel::detectCores()
...	Additional parameters for future functionality.

Value

A data.frame containing the predicted values, their associated standard errors, and optionally the metadata.

Author(s)

Johan Aparicio [aut]

Examples

library(flexFitR)
data(dt_potato)
mod_1 <- dt_potato |>
  modeler(
    x = DAP,
    y = Canopy,
    grp = Plot,
    fn = "fn_lin_plat",
    parameters = c(t1 = 45, t2 = 80, k = 0.9),
    subset = c(15, 2, 45)
  )
print(mod_1)
# Point Prediction
predict(mod_1, x = 45, type = "point", id = 2)
# AUC Prediction
predict(mod_1, x = c(0, 108), type = "auc", id = 2)
# First Derivative
predict(mod_1, x = 45, type = "fd", id = 2)
# Second Derivative
predict(mod_1, x = 45, type = "sd", id = 2)
# Function of the parameters
predict(mod_1, formula = ~ t2 - t1, id = 2)

flexFitR documentation built on April 16, 2025, 5:09 p.m.