flux_gep: Calculates GEP

In fluxible: Ecosystem Gas Fluxes Calculations for Closed Loop Chamber Setup

Calculates GEP

Description

flux_gep was renamed flux_gpp out of consistancy with the litterature.

Calculate gross ecosystem production (GEP) from net ecosystem (NEE) exchange and ecosystem respiration (ER) as GEP = NEE - ER. Datetime and other variables to keep will be taken from the NEE measurement. Fluxes presents in the dataset that are neither NEE nor ER (soilR, LRC or other) are not lost.

Usage

flux_gep(
  fluxes_df,
  type_col,
  f_datetime,
  f_flux = f_flux,
  id_cols,
  nee_arg = "NEE",
  er_arg = "ER",
  cols_keep = "none"
)

Arguments

fluxes_df	a dataframe containing NEE and ER
type_col	column containing type of flux (NEE or ER)
f_datetime	column containing start of measurement as datetime
f_flux	column containing flux values
id_cols	columns used to identify each pair of ER and NEE
nee_arg	argument designating NEE fluxes in type column
er_arg	argument designating ER fluxes in type column
cols_keep	columns to keep from fluxes_df. Values from NEE row will be filled in GEP row. none (default) keeps only the columns in id_cols, flux, type and datetime columns; all keeps all the columns; can also be a vector of column names.

Value

a dataframe with $GEP = NEE - ER$ in long format with GEP, NEE, and ER as flux type, datetime, and any column specified in cols_keep. Values of datetime and columns in cols_keep for GEP row are taken from NEE measurements.

Examples

data(co2_fluxes)
flux_gep(co2_fluxes, type, f_start, id_cols = "turfID",
cols_keep = c("temp_soil"))

fluxible documentation built on June 25, 2025, 1:08 a.m.