View source: R/buildEnsembleCPTs.R
buildEnsembleCPTs | R Documentation |
Build ensemble of CPTs from a list of simulations
buildEnsembleCPTs(lsimu, lminimalProbGenoMOI)
lsimu |
list of simulations |
lminimalProbGenoMOI |
list of minimal probabilities of genotypes given MOI # nolint |
list of CPTs
library(forrel)
library(mispitools)
freqs <- lapply(getfreqs(Argentina)[1:15], function(x) {x[x!=0]})
fam <- linearPed(2)
fam <- addChildren(fam, father = 1, mother = 2)
fam <- pedtools::setMarkers(fam, locusAttributes = freqs)
ped <- profileSim(fam, N = 1, ids = c(6) , numCores = 1,seed=123)
lsimEnsemble <- simTestIDMarkers(ped,2,numSim=5,seed=123)
lensembleIT <- buildEnsembleITValues(lsimu=lsimEnsemble,ITtab=simME$ITtable,bFullIT = TRUE)
lensembleCPTs <- buildEnsembleCPTs(lsimu=lsimEnsemble,lminimalProbGenoMOI=simME$lprobGenoMOI)
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