t_runningmean: Compute sums or means over a sliding time window.

In fromo: Fast Robust Moments

Description

Compute the mean or sum over an infinite or finite sliding time window, returning a vector the same size as the lookback times.

Usage

t_running_sum(v, time = NULL, time_deltas = NULL, window = NULL,
  wts = NULL, lb_time = NULL, na_rm = FALSE, min_df = 0L,
  restart_period = 10000L, variable_win = FALSE, wts_as_delta = TRUE,
  check_wts = FALSE)

t_running_mean(v, time = NULL, time_deltas = NULL, window = NULL,
  wts = NULL, lb_time = NULL, na_rm = FALSE, min_df = 0L,
  restart_period = 10000L, variable_win = FALSE, wts_as_delta = TRUE,
  check_wts = FALSE)

Arguments

v	a vector.
time	an optional vector of the timestamps of v. If given, must be the same length as v. If not given, we try to infer it by summing the time_deltas.
time_deltas	an optional vector of the deltas of timestamps. If given, must be the same length as v. If not given, and wts are given and wts_as_delta is true, we take the wts as the time deltas. The deltas must be positive. We sum them to arrive at the times.
window	the window size, in time units. if given as finite integer or double, passed through. If NULL, NA_integer_, NA_real_ or Inf are given, and variable_win is true, then we infer the window from the lookback times: the first window is infinite, but the remaining is the deltas between lookback times. If variable_win is false, then these undefined values are equivalent to an infinite window. If negative, an error will be thrown.
wts	an optional vector of weights. Weights are ‘replication’ weights, meaning a value of 2 is shorthand for having two observations with the corresponding v value. If NULL, corresponds to equal unit weights, the default. Note that weights are typically only meaningfully defined up to a multiplicative constant, meaning the units of weights are immaterial, with the exception that methods which check for minimum df will, in the weighted case, check against the sum of weights. For this reason, weights less than 1 could cause NA to be returned unexpectedly due to the minimum condition. When weights are NA, the same rules for checking v are applied. That is, the observation will not contribute to the moment if the weight is NA when na_rm is true. When there is no checking, an NA value will cause the output to be NA.
lb_time	a vector of the times from which lookback will be performed. The output should be the same size as this vector. If not given, defaults to time.
na_rm	whether to remove NA, false by default.
min_df	the minimum df to return a value, otherwise NaN is returned, only for the means computation. This can be used to prevent moments from being computed on too few observations. Defaults to zero, meaning no restriction.
restart_period	the recompute period. because subtraction of elements can cause loss of precision, the computation of moments is restarted periodically based on this parameter. Larger values mean fewer restarts and faster, though potentially less accurate results. Unlike in the computation of even order moments, loss of precision is unlikely to be disastrous, so the default value is rather large.
variable_win	if true, and the window is not a concrete number, the computation window becomes the time between lookback times.
wts_as_delta	if true and the time and time_deltas are not given, but wts are given, we take wts as the time_deltas.
check_wts	a boolean for whether the code shall check for negative weights, and throw an error when they are found. Default false for speed.

Details

Computes the mean or sum of the elements, using a Kahan's Compensated Summation Algorithm, a numerically robust one-pass method.

Given the length n vector x, we output matrix M where M_i,1 is the sum or mean of some elements x_i defined by the sliding time window. Barring NA or NaN, this is over a window of time width window.

Value

A vector the same size as the lookback times.

Time Windowing

This function supports time (or other counter) based running computation. Here the input are the data x_i, and optional weights vectors, w_i, defaulting to 1, and a vector of time indices, t_i of the same length as x. The times must be non-decreasing:

t_1 <= t_2 <= ...

It is assumed that t_0 = -∞. The window, W is now a time-based window. An optional set of lookback times are also given, b_j, which may have different length than the x and w. The output will correspond to the lookback times, and should be the same length. The jth output is computed over indices i such that

b_j - W < t_i ≤ b_j.

For comparison functions (like Z-score, rescaling, centering), which compare values of x_i to local moments, the lookbacks may not be given, but a lookahead L is admitted. In this case, the jth output is computed over indices i such that

t_j - W + L < t_i ≤ t_j + L.

If the times are not given, ‘deltas’ may be given instead. If δ_i are the deltas, then we compute the times as

t_i = ∑_{1 ≤ j ≤ i} δ_j.

The deltas must be the same length as x. If times and deltas are not given, but weights are given and the ‘weights as deltas’ flag is set true, then the weights are used as the deltas.

Some times it makes sense to have the computational window be the space between lookback times. That is, the jth output is to be computed over indices i such that

b_{j-1} - W < t_i ≤ b_j.

This can be achieved by setting the ‘variable window’ flag true and setting the window to null. This will not make much sense if the lookback times are equal to the times, since each moment computation is over a set of a single index, and most moments are underdefined.

Note

The moment computations provided by fromo are numerically robust, but will often not provide the same results as the 'standard' implementations, due to differences in roundoff. We make every attempt to balance speed and robustness. User assumes all risk from using the fromo package.

Note that when weights are given, they are treated as replication weights. This can have subtle effects on computations which require minimum degrees of freedom, since the sum of weights will be compared to that minimum, not the number of data points. Weight values (much) less than 1 can cause computations to return NA somewhat unexpectedly due to this condition, while values greater than one might cause the computation to spuriously return a value with little precision.

Author(s)

Steven E. Pav [e-mail]

References

Terriberry, T. "Computing Higher-Order Moments Online." http://people.xiph.org/~tterribe/notes/homs.html

J. Bennett, et. al., "Numerically Stable, Single-Pass, Parallel Statistics Algorithms," Proceedings of IEEE International Conference on Cluster Computing, 2009. https://www.semanticscholar.org/paper/Numerically-stable-single-pass-parallel-statistics-Bennett-Grout/a83ed72a5ba86622d5eb6395299b46d51c901265

Cook, J. D. "Accurately computing running variance." http://www.johndcook.com/standard_deviation.html

Cook, J. D. "Comparing three methods of computing standard deviation." http://www.johndcook.com/blog/2008/09/26/comparing-three-methods-of-computing-standard-deviation

Kahan, W. "Further remarks on reducing truncation errors," Communications of the ACM, 8 (1), 1965. https://doi.org/10.1145/363707.363723

Wikipedia contributors "Kahan summation algorithm," Wikipedia, The Free Encyclopedia, https://en.wikipedia.org/w/index.php?title=Kahan_summation_algorithm&oldid=777164752 (accessed May 31, 2017).

Examples

x <- rnorm(1e5)
xs <- t_running_sum(x,time=seq_along(x),window=10)
xm <- t_running_mean(x,time=cumsum(runif(length(x))),window=7.3)

fromo documentation built on May 2, 2019, 5:07 a.m.