fulltext: Full Text of 'Scholarly' Articles Across Many Data Sources

Share:

Provides a single interface to many sources of full text 'scholarly' data, including 'Biomed Central', Public Library of Science, 'Pubmed Central', 'eLife', 'F1000Research', 'PeerJ', 'Pensoft', 'Hindawi', 'arXiv' 'preprints', and more. Functionality included for searching for articles, downloading full or partial text, downloading supplementary materials, converting to various data formats used in and outside of R.

Author
Scott Chamberlain [aut, cre]
Date of publication
2016-07-23 08:32:28
Maintainer
Scott Chamberlain <myrmecocystus@gmail.com>
License
MIT + file LICENSE
Version
0.1.8
URLs

View on CRAN

Man pages

bmc_search
Search for gene sequences available for a species from NCBI.
cache
Cache blobs of json, xml or pdfs of text from ft_get()...
chunks
Extract chunks of data from articles
collect
Collect data from a remote source in fulltext
eupmc
Europe PMC utilities
extract_tools
PDF extraction tools
ft_browse
Browse an article in your default browser
ft_extract
Extract text from a single pdf document
ft_extract_corpus
Extract text from one to many pdf documents into a tm Corpus...
ft_get
Get full text
ft_get_si
Download supplementary materials from journals
ft_links
Get full text links
ft_providers
Search for information on journals or publishers.
ft_search
Search for full text
ft_serialize
Serialize raw text to other formats, including to disk
ft_type_sum
Type summary
fulltext-package
Fulltext search and retrieval of scholarly texts.
pdfx
PDF-to-XML conversion of scientific articles using pdfx
pipe
Pipe operator

Files in this package

fulltext
fulltext/inst
fulltext/inst/examples
fulltext/inst/examples/example4.pdf
fulltext/inst/examples/example2.pdf
fulltext/inst/examples/example1.pdf
fulltext/inst/examples/example3.pdf
fulltext/inst/examples/example5.pdf
fulltext/inst/ignore
fulltext/inst/ignore/test-collect.R
fulltext/inst/ignore/bmc_xml.R
fulltext/inst/ignore/config.R
fulltext/inst/ignore/elsevier_code.R
fulltext/inst/ignore/cache_old_code.R
fulltext/inst/doc
fulltext/inst/doc/getting_fulltext.html
fulltext/inst/doc/formats.html
fulltext/inst/doc/fulltext_vignette.html
fulltext/inst/doc/formats.Rmd
fulltext/inst/doc/fulltext_vignette.Rmd
fulltext/inst/doc/getting_fulltext.Rmd
fulltext/inst/vign
fulltext/inst/vign/getting_fulltext.md
fulltext/inst/vign/formats.Rmd
fulltext/inst/vign/formats.md
fulltext/inst/vign/fulltext_vignette.Rmd
fulltext/inst/vign/fulltext_vignette.md
fulltext/inst/vign/getting_fulltext.Rmd
fulltext/tests
fulltext/tests/testthat
fulltext/tests/testthat/test-ft_providers.R
fulltext/tests/testthat/test-ft_get.r
fulltext/tests/testthat/test-ft_serialize.R
fulltext/tests/testthat/test-ft_browse.R
fulltext/tests/testthat/test-chunks.R
fulltext/tests/testthat/test-ft_search.R
fulltext/tests/testthat/test-ft_extract_corpus.R
fulltext/tests/testthat/test-ft_get_si.r
fulltext/tests/testthat/test-ft_extract.R
fulltext/tests/longtests
fulltext/tests/longtests/example1.pdf
fulltext/tests/longtests/test-pdfx.R
fulltext/NAMESPACE
fulltext/NEWS.md
fulltext/R
fulltext/R/ft_extract.R
fulltext/R/ft_get_si_utils.R
fulltext/R/collect.R
fulltext/R/fulltext-package.R
fulltext/R/ft_extract_utils.R
fulltext/R/plugins_get_old.R
fulltext/R/ft_links.R
fulltext/R/tm_helpers.R
fulltext/R/pdfx.R
fulltext/R/europe_pmc_utils.R
fulltext/R/pipe.R
fulltext/R/ft_get.R
fulltext/R/ft_serialize.R
fulltext/R/plugins_get.R
fulltext/R/ft_providers.R
fulltext/R/ft_get_si.R
fulltext/R/bmc_utils.R
fulltext/R/ft_extract_corpus.R
fulltext/R/plugins_search.R
fulltext/R/cache.R
fulltext/R/plugins_links.R
fulltext/R/chunks.R
fulltext/R/extract_tools.R
fulltext/R/ft_get_si_plugins.R
fulltext/R/ft_search.R
fulltext/R/ft_browse.R
fulltext/R/bio_utils.R
fulltext/R/zzz.R
fulltext/R/rbindfill.R
fulltext/vignettes
fulltext/vignettes/formats.Rmd
fulltext/vignettes/fulltext_vignette.Rmd
fulltext/vignettes/getting_fulltext.Rmd
fulltext/README.md
fulltext/MD5
fulltext/build
fulltext/build/vignette.rds
fulltext/DESCRIPTION
fulltext/man
fulltext/man/bmc_search.Rd
fulltext/man/pipe.Rd
fulltext/man/fulltext-package.Rd
fulltext/man/ft_browse.Rd
fulltext/man/extract_tools.Rd
fulltext/man/eupmc.Rd
fulltext/man/ft_links.Rd
fulltext/man/ft_type_sum.Rd
fulltext/man/ft_serialize.Rd
fulltext/man/chunks.Rd
fulltext/man/ft_get.Rd
fulltext/man/ft_providers.Rd
fulltext/man/ft_extract_corpus.Rd
fulltext/man/cache.Rd
fulltext/man/ft_search.Rd
fulltext/man/collect.Rd
fulltext/man/pdfx.Rd
fulltext/man/ft_extract.Rd
fulltext/man/ft_get_si.Rd
fulltext/LICENSE