funcy: Functional Clustering Algorithms

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Unified framework to cluster functional data according to one of seven models. All models are based on the projection of the curves onto a basis. The main function funcit() calls wrapper functions for the existing algorithms, so that input parameters are the same. A list is returned with each entry representing the same or extended output for the corresponding method. Method specific as well as general visualization tools are available.

Author
Christina Yassouridis [aut, cre], Dominik Ernst [ctb], Madison Giacofci [ctb], Sophie Lambert-Lacroix [ctb], Guillemette Marot [ctb], Franck Picard [ctb], Nicoleta Serban [ctb], Huijing Jiang [ctb], Gareth James [ctb], Catherine Sugar [ctb], Hans-Georg Mueller [ctb], Jie Peng [ctb], Chiou Jeng-Min [ctb], Pai-Ling Li [ctb]
Date of publication
2016-05-11 12:06:31
Maintainer
Christina Yassouridis <c_ya02@yahoo.de>
License
GPL-2
Version
0.8.5

View on CRAN

Man pages

accordance
Accordance for cluster outcomes from different methods.
bones
Bone density
CClust-methods
Methods for CClust object.
dist2centers
Calculates curve distances to the centers.
electricity
Electric power
formatFuncy
Switch between different data formats.
fpca
Functional principal component analysis
fpcCtrl-class
Class "fpcCtrl"
funcit
Functional Cluster Analysis
funcyCtrl-class
Class '"funcyCtrl"'
funcyOut-class
Class '"funcyOut"'
funcyOutList
Class '"funcyOutList"'
funcyOutList-methods
Methods for the output of 'funcit', an object of class...
genes
Gene expression profiles
getUniCl
Unique cluster labels
label2lowerk
Relabeling of clusters.
lowflow
Gauges in Austria
makeCommonTime
Create appropriate evaluation time points.
plot
Methods for Function 'plot' in Package 'funcy'
plotFuncy
Plot functional data.
regFuncy
Converts irregular data into regular.
relabel
Relabel cluster IDs.
rIMethods
Rand index for cluster configurations of different methods.
sampleFuncy
Simulate functional data.

Files in this package

funcy
funcy/inst
funcy/inst/COPYRIGHTS
funcy/tests
funcy/tests/testMethods.R
funcy/src
funcy/src/Makevars
funcy/src/fscm.cc
funcy/src/math
funcy/src/math/math_lib.h
funcy/src/math/math_lib_impl.h
funcy/src/math/kernel.h
funcy/src/math/discrete.h
funcy/src/math/discrete.cc
funcy/src/fastlib
funcy/src/fastlib/fastlib.h
funcy/src/base
funcy/src/base/ansi_colors.h
funcy/src/base/otrav_impl.h
funcy/src/base/common.h
funcy/src/base/ccmem.cc
funcy/src/base/common.c
funcy/src/base/cc.h
funcy/src/base/fortran.h
funcy/src/base/cc.cc
funcy/src/base/base.h
funcy/src/base/otrav.cc
funcy/src/base/otrav.h
funcy/src/base/debug.c
funcy/src/base/deprecated.h
funcy/src/base/compiler.h
funcy/src/base/debug.h
funcy/src/base/test.h
funcy/src/base/basic_types.h
funcy/src/base/ccmem.h
funcy/src/file
funcy/src/file/textfile.cc
funcy/src/file/textfile.h
funcy/src/libmain.cc
funcy/src/data
funcy/src/data/crossvalidation.h
funcy/src/data/dataset.h
funcy/src/data/dataset.cc
funcy/src/Makevars.win
funcy/src/col
funcy/src/col/col_string.h
funcy/src/col/fastalloc.h
funcy/src/col/heap.h
funcy/src/col/intmap.h
funcy/src/col/queue.h
funcy/src/col/col.cc
funcy/src/col/arraylist.h
funcy/src/col/rangeset.h
funcy/src/fscm.h
funcy/src/la
funcy/src/la/uselapack.cc
funcy/src/la/clapack.h
funcy/src/la/blas.h
funcy/src/la/la.h
funcy/src/la/uselapack.h
funcy/src/la/matrix.h
funcy/src/par
funcy/src/par/task.h
funcy/src/par/thread.h
funcy/src/par/grain.h
funcy/src/fx
funcy/src/fx/stopwatch.c
funcy/src/fx/fx.h
funcy/src/fx/stopwatch.h
funcy/src/fx/fx.c
funcy/src/fx/datanode.c
funcy/src/fx/datanode.h
funcy/NAMESPACE
funcy/NEWS.md
funcy/data
funcy/data/electricity.RData
funcy/data/genes.RData
funcy/data/bones.RData
funcy/data/lowflow.RData
funcy/R
funcy/R/classes.R
funcy/R/utils.R
funcy/R/distclust.R
funcy/R/plot.R
funcy/R/wrappers.R
funcy/R/format.R
funcy/R/plotFSCM.R
funcy/R/curvclust.R
funcy/R/functions.R
funcy/R/plotFPCs.R
funcy/R/fitfclust.R
funcy/R/fscm.R
funcy/R/smoothers.R
funcy/R/iterSubspace.R
funcy/R/sampleSet.R
funcy/R/xecute.R
funcy/R/classesCurvclust.R
funcy/R/funPrinComp.R
funcy/R/Rfscm.R
funcy/MD5
funcy/DESCRIPTION
funcy/man
funcy/man/fpcCtrl-class.Rd
funcy/man/funcyOutList-methods.Rd
funcy/man/fpca.Rd
funcy/man/electricity.Rd
funcy/man/bones.Rd
funcy/man/funcyCtrl-class.Rd
funcy/man/CClust-methods.Rd
funcy/man/lowflow.Rd
funcy/man/funcyOut-class.Rd
funcy/man/dist2centers.Rd
funcy/man/makeCommonTime.Rd
funcy/man/getUniCl.Rd
funcy/man/formatFuncy.Rd
funcy/man/genes.Rd
funcy/man/accordance.Rd
funcy/man/regFuncy.Rd
funcy/man/funcit.Rd
funcy/man/funcyOutList.Rd
funcy/man/plotFuncy.Rd
funcy/man/label2lowerk.Rd
funcy/man/relabel.Rd
funcy/man/plot.Rd
funcy/man/sampleFuncy.Rd
funcy/man/rIMethods.Rd