gambin: Fit the GamBin Model to Species Abundance Distributions
Version 1.4

Fits the gambin distribution to species-abundance distributions from ecological data. 'gambin' is short for 'gamma-binomial'. The main function is fitGambin, which estimates the 'alpha' parameter of the gambin distribution using maximum likelihood. Functions are also provided to generate the gambin distribution and for calculating likelihood statistics.

Browse man pages Browse package API and functions Browse package files

AuthorMichael Krabbe Borregaard, Thomas Matthews & Karl Ugland
Date of publication2016-06-23 01:05:59
MaintainerMichael Krabbe Borregaard <mkborregaard@snm.ku.dk>
LicenseGPL-3
Version1.4
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("gambin")

Man pages

create_octaves: Reclassify a vector of species' abundances into abundance...
dgambin: Calculate the gambin distribution
fitGambin: Fit the GamBin model to a species abundance distribution
gambin-package: Fit the gambin model to species abundance distributions
logLik.gambin: Likelihood statistics for the GamBin model
moths: Williams' Rothamsted moth data

Functions

AIC.gambin Man page Source code
AICc Man page Source code
AICc.gambin Man page Source code
BIC.gambin Man page Source code
confint.gambin Man page Source code
create_octaves Man page Source code
dgambin Man page Source code
est_confint Source code
fitGambin Man page Source code
gambin Man page
gambin-package Man page
gambin_exp Man page Source code
logLik.gambin Man page Source code
logLik_gamBin Source code
moths Man page
nobs.gambin Man page Source code
plot.gambin Man page Source code
predict.gambin Man page Source code
print.gambin Man page Source code
print.summary.gambin Man page Source code
sample_abundances Source code
summary.gambin Man page Source code

Files

inst
inst/CITATION
NAMESPACE
data
data/moths.rda
R
R/AIC.gambin.R
R/AICc.R
R/logLik.gambin.R
R/predict.gambin.R
R/gambin_exp.R
R/print.gambin.R
R/create_octaves.R
R/print.summary.gambin.R
R/gambin-internal.R
R/dgambin.R
R/summary.gambin.R
R/AICc.gambin.R
R/nobs.gambin.R
R/confint.gambin.R
R/BIC.gambin.R
R/fitGambin.R
R/plot.gambin.R
MD5
DESCRIPTION
man
man/moths.Rd
man/fitGambin.Rd
man/dgambin.Rd
man/logLik.gambin.Rd
man/create_octaves.Rd
man/gambin-package.Rd
gambin documentation built on May 19, 2017, 8:26 p.m.