CDKN: An example data for regional association plot

In gap.datasets: Datasets for 'gap'

An example data for regional association plot

Description

These data are adapted from the DGI study on CDKN2A/CDKN2B region.

Usage

data(CDKN)

Format

There are three data objects in the dataset: CDKNgenes, the gene list from the Chromosome 9 according to UCSC browser (https://genome.ucsc.edu/); CDKNmap, the genetic map as from the HapMap website (https://ftp.ncbi.nlm.nih.gov/hapmap/recombination/2006-10_rel21_phaseI+II/rates/); CDKNlocus, the results from the association analysis of the locus based on DGI data.

Source

The data were obtained from the Harvard-MIT Broad Institute (see https://www.broadinstitute.org/diabetes)

References

Diabetes Genetics Initiative of Broad Institute of Havard and MIT, Lund University and Novartis Institute for BioMedical Research. Whole-genome association analysis identifies novel loci for type 2 diabetes and triglyceride levels Science 2007;316(5829):1331-6

Examples

data(CDKN)
head(CDKNlocus)

gap.datasets documentation built on Aug. 25, 2023, 5:14 p.m.