gdm: Generalized Dissimilarity Modeling
Version 1.3.2

A toolkit with functions to fit, plot, and summarize Generalized Dissimilarity Models (Ferrier et al. 2007, ).

AuthorGlenn Manion, Matthew Lisk, Simon Ferrier, Diego Nieto-Lugilde, Karel Mokany, Matthew C. Fitzpatrick
Date of publication2017-03-25 10:58:21 UTC
MaintainerMatthew C. Fitzpatrick <mfitzpatrick@umces.edu>
LicenseGPL-2
Version1.3.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("gdm")

Getting started

Package overview

Popular man pages

createsitepair: Creates Site-Pair Table
gdm: Fit a Generalized Dissimilarity Model to Tabular Site-Pair...
gdmDissim: A sample biological dissimilarity matrix for use in GDM...
gdm-package: Overview of the functions in the gdm package
gdm.varImp: Quantify model significance and variable...
plot.gdm: Plot model fit and I-splines from a generalized dissimilarity...
stackedVars: Worldclim climate variables used to fit GDM in examples
See all...

All man pages Function index File listing

Man pages

createsitepair: Creates Site-Pair Table
formatsitepair: Converts Common Biological (Response) and Environmental...
gdm: Fit a Generalized Dissimilarity Model to Tabular Site-Pair...
gdmDissim: A sample biological dissimilarity matrix for use in GDM...
gdmExpData: Species and environmental data used in GDM examples
gdm-package: Overview of the functions in the gdm package
gdm.transform: Transform Environmental Data Using a Generalized...
gdm.varImp: Quantify model significance and variable...
isplineExtract: Extract I-spline Values From a gdm Object.
permutateSitePair: Permutate Site-Pair Table Rows
permutateVarSitePair: Permutate the Values of a Site-Pair Table Variable
plot.gdm: Plot model fit and I-splines from a generalized dissimilarity...
plotUncertainty: Plot I-splines with error bands using bootstrapping.
predict.gdm: Predict Biological Dissimilarities Between Sites or Times...
removeSitesFromSitePair: Remove Random Sites from Site-Pair Table
stackedVars: Worldclim climate variables used to fit GDM in examples
summary.gdm: Summarize a Fitted Generalized Dissimilarity Model

Functions

createsitepair Man page Source code
formatsitepair Man page Source code
gdm Man page Source code
gdm-package Man page
gdm.transform Man page Source code
gdm.varImp Man page Source code
gdmDissim Man page
gdmExpData Man page
isplineExtract Man page Source code
permutateSitePair Man page Source code
permutateVarSitePair Man page Source code
plot Man page
plot.gdm Man page Source code
plotUncertainty Man page Source code
predict Man page
predict.gdm Man page Source code
removeSitesFromSitePair Man page Source code
stackedVars Man page
summary Man page
summary.gdm Man page Source code

Files

inst
inst/extdata
inst/extdata/stackedVars.gri
inst/extdata/stackedVars.grd
inst/doc
inst/doc/gdmVignette.pdf.asis
inst/doc/gdmVignette.pdf
src
src/myCallback.h
src/Makevars
src/NNLS_Double.cpp
src/NNLSDoubleCore.cpp
src/Message.h
src/NNLS_Double.h
src/registerDynamicSymbol.c
src/Message.cpp
src/Gdmlib.cpp
src/Gdmlib.h
src/stdafx.cpp
src/stdafx.h
src/Makevars.win
src/NNLSDoubleCore.h
src/GDM_Globals.h
src/dllmain.cpp
NAMESPACE
data
data/gdm.RData
R
R/GDM_Table_Funcs.R
vignettes
vignettes/gdmVignette.pdf.asis
MD5
build
build/vignette.rds
DESCRIPTION
man
man/gdmExpData.Rd
man/permutateVarSitePair.Rd
man/stackedVars.Rd
man/gdm.varImp.Rd
man/plotUncertainty.Rd
man/removeSitesFromSitePair.Rd
man/predict.gdm.Rd
man/gdm.Rd
man/gdmDissim.Rd
man/plot.gdm.Rd
man/gdm.transform.Rd
man/permutateSitePair.Rd
man/gdm-package.Rd
man/isplineExtract.Rd
man/formatsitepair.Rd
man/createsitepair.Rd
man/summary.gdm.Rd
gdm documentation built on May 19, 2017, 4:10 p.m.

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