Man pages for gemma2
GEMMA Multivariate Linear Mixed Model
| calc_omega | Calculate Omega matrices |
| calc_qi | Calculate Qi (inverse of Q) and log determinant of Q |
| calc_sigma | Calculate Sigma_ee and Sigma_uu matrices |
| calc_XHiY | Calculate XHiY |
| center_kinship | Center a relatedness matrix, after Zhou's GEMMA function... |
| eigen2 | Calculate eigendecomposition and return ordered eigenvalues... |
| eigen_proc | Eigendecomposition procedure for Vg and Ve |
| gemma2 | gemma2 |
| MphCalcLogL | Calculate log likelihood |
| MphEM | Perform expectation-maximization algorithm to infer Vg and Ve... |
| stagger_mats | Stagger matrices within a larger, block-diagonal matrix |
| update_e | Update E |
| UpdateRL_B | Update B for restricted log likelihood |
| update_u | Update U matrix |
| update_v | Update V_e and V_g |
