gemtc: Network Meta-Analysis Using Bayesian Methods

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Network meta-analyses (mixed treatment comparisons) in the Bayesian framework using JAGS. Includes methods to assess heterogeneity and inconsistency, and a number of standard visualizations.

Author
Gert van Valkenhoef, Joel Kuiper
Date of publication
2016-09-06 15:34:06
Maintainer
Gert van Valkenhoef <g.h.m.van.valkenhoef@rug.nl>
License
GPL-3
Version
0.8.1
URLs

View on CRAN

Man pages

atrialFibrillation
Prevention of stroke in atrial fibrillation patients
blobbogram
Plot a blobbogram (AKA forest plot)
blocker
Beta blockers to prevent mortality after myocardial...
certolizumab
Certolizumab Pegol (CZP) for Rheumatoid Arthritis
depression
Treatment response in major depression
dietfat
Effects of low-fat diets on mortality
gemtc-package
GeMTC: Network meta-analysis in R
hfPrevention
Statins versus placebo in primary and secondary prevention of...
ll.call
Call a likelihood/link-specific function
mtc.anohe
Analysis of heterogeneity (ANOHE)
mtc.data.studyrow
Convert one-study-per-row datasets
mtc.deviance
Inspect residual deviance
mtc.hy.prior
Set priors for the heterogeneity parameter
mtc.model
Generate network meta-analysis models
mtc.network
Create an mtc.network
mtc.nodesplit
Node-splitting analysis of inconsistency
mtc.run
Running an 'mtc.model' using an MCMC sampler
parkinson
Mean off-time reduction in Parkinson's disease
plotCovariateEffect
Plot treatment effects versus covariate values
rank.probability
Calculating rank-probabilities
read.mtc.network
Read mtc.network from legacy GeMTC XML files (.gemtc)
relative.effect
Calculating relative effects
relative.effect.table
Table of relative effects
smoking
Psychological treatments to aid smoking cessation
thrombolytic
Thrombolytic treatment after acute myocardial infarction

Files in this package

gemtc
gemtc/inst
gemtc/inst/gemtc.likelihood.poisson.txt
gemtc/inst/gemtc.fixedeffect.txt
gemtc/inst/gemtc.randomeffects.txt
gemtc/inst/gemtc.releffect.likelihood.rm.txt
gemtc/inst/gemtc.model.use.template.txt
gemtc/inst/gemtc.armeffect.likelihood.txt
gemtc/inst/gemtc.releffect.likelihood.r2.txt
gemtc/inst/gemtc.likelihood.normal.txt
gemtc/inst/gemtc.likelihood.normal.power.txt
gemtc/inst/gemtc.likelihood.poisson.power.txt
gemtc/inst/gemtc.releffect.likelihood.power.rm.txt
gemtc/inst/gemtc.likelihood.binom.txt
gemtc/inst/extdata
gemtc/inst/extdata/luades-smoking.gemtc
gemtc/inst/extdata/parkinson.ns.rds
gemtc/inst/extdata/parkinson.gemtc
gemtc/inst/extdata/luades-smoking.samples.gz
gemtc/inst/gemtc.releffect.likelihood.power.r2.txt
gemtc/inst/gemtc.model.template.txt
gemtc/inst/gemtc.likelihood.binom.power.txt
gemtc/tests
gemtc/tests/data
gemtc/tests/data/studyrow
gemtc/tests/data/studyrow/tsd2-7.data.txt
gemtc/tests/data/studyrow/tsd2-2.data.txt
gemtc/tests/data/studyrow/tsd2-5.data.txt
gemtc/tests/data/studyrow/tsd2-5.out.txt
gemtc/tests/data/studyrow/tsd2-3.out.txt
gemtc/tests/data/studyrow/tsd2-2.out.txt
gemtc/tests/data/studyrow/tsd2-8.data1.txt
gemtc/tests/data/studyrow/tsd2-8.out1.txt
gemtc/tests/data/studyrow/tsd2-8.out2.txt
gemtc/tests/data/studyrow/tsd2-8.data2.txt
gemtc/tests/data/studyrow/tsd2-1.data.txt
gemtc/tests/data/studyrow/tsd2-1.out.txt
gemtc/tests/data/studyrow/tsd2-7.out.txt
gemtc/tests/data/studyrow/tsd2-3.data.txt
gemtc/tests/data/riskratio.data.txt
gemtc/tests/data/diabetes-surv.summaries.txt
gemtc/tests/data/welton-diastolic.summaries.txt
gemtc/tests/data/diabetes-surv.data.txt
gemtc/tests/data/parkinson-shared.summaries.txt
gemtc/tests/data/dietfat.re.summaries.txt
gemtc/tests/data/luades-thrombolytic.summaries.txt
gemtc/tests/data/smoking-ume.data.txt
gemtc/tests/data/diabetes-surv.fe.summaries.txt
gemtc/tests/data/riskratio.summaries.txt
gemtc/tests/data/welton-cholesterol.summaries.txt
gemtc/tests/data/welton-cholesterol.gemtc
gemtc/tests/data/rr-pairwise.csv
gemtc/tests/data/ns-complex.csv
gemtc/tests/data/smoking-ume.summaries.txt
gemtc/tests/data/dietfat.fe.summaries.txt
gemtc/tests/data/anohe-breaking.gemtc
gemtc/tests/data/cipriani-efficacy.summaries.txt
gemtc/tests/data/parkinson-diff.summaries.txt
gemtc/tests/data/luades-smoking.summaries.txt
gemtc/tests/data/welton-diastolic.gemtc
gemtc/tests/data/parkinson.summaries.txt
gemtc/tests/data/welton-systolic.gemtc
gemtc/tests/data/welton-systolic.summaries.txt
gemtc/tests/test.R
gemtc/tests/testthat
gemtc/tests/testthat/test-unit-read.mtc.network.R
gemtc/tests/testthat/test-unit-inits.to.monitors.R
gemtc/tests/testthat/test-unit-arrayize.R
gemtc/tests/testthat/test-regress-anohe.R
gemtc/tests/testthat/test-unit-template.R
gemtc/tests/testthat/test-validate-welton-diastolic.R
gemtc/tests/testthat/test-unit-minimum.diameter.spanning.tree.R
gemtc/tests/testthat/test-unit-mtc.model_duparm.R
gemtc/tests/testthat/test-unit-ll.binom.logit.R
gemtc/tests/testthat/test-unit-regression.R
gemtc/tests/testthat/test-validate-parkinson-diff.R
gemtc/tests/testthat/test-unit-mtc.model.ume.R
gemtc/tests/testthat/test-validate-parkinson-shared.R
gemtc/tests/testthat/test-validate-riskratio.R
gemtc/tests/testthat/test-unit-mtc.model.use.R
gemtc/tests/testthat/test-unit-mtc.model_inits.R
gemtc/tests/testthat/helper-validate.R
gemtc/tests/testthat/test-unit-mtc.model.graph.R
gemtc/tests/testthat/test-unit-ll.binom.log.R
gemtc/tests/testthat/test-validate-welton-systolic.R
gemtc/tests/testthat/test-validate-dietfat-fe.R
gemtc/tests/testthat/test-validate-diabetes-surv-fe.R
gemtc/tests/testthat/helper-regress.R
gemtc/tests/testthat/test-unit-ll.poisson.log.R
gemtc/tests/testthat/test-unit-mtc.nr.comparisons.R
gemtc/tests/testthat/test-unit-ll.R
gemtc/tests/testthat/test-regress-models.R
gemtc/tests/testthat/test-unit-mtc.network_data.re.R
gemtc/tests/testthat/test-validate-diabetes-surv.R
gemtc/tests/testthat/test-validate-luades-smoking.R
gemtc/tests/testthat/test-validate-dietfat-re.R
gemtc/tests/testthat/test-unit-nodesplit.R
gemtc/tests/testthat/test-unit-has.indirect.evidence.R
gemtc/tests/testthat/test-validate-smoking-ume.R
gemtc/tests/testthat/test-validate-luades-thrombolytic.R
gemtc/tests/testthat/test-unit-decompose.R
gemtc/tests/testthat/test-unit-mtc.model_data.R
gemtc/tests/testthat/test-unit-mtc.hy.prior.R
gemtc/tests/testthat/test-unit-mtc.study.treatment.matrix.R
gemtc/tests/testthat/test-unit-mtc.model.nodesplit.R
gemtc/tests/testthat/test-unit-allpairs.R
gemtc/tests/testthat/test-unit-relative.effect.R
gemtc/tests/testthat/test-validate-welton-cholesterol.R
gemtc/tests/testthat/test-validate-cipriani-efficacy.R
gemtc/tests/testthat/test-validate-parkinson.R
gemtc/tests/testthat/test-unit-mtc.model_columns.R
gemtc/tests/testthat/test-unit-mtc.model.consistency.R
gemtc/tests/testthat/test-unit-relative.effect.table.R
gemtc/tests/testthat/test-unit-studyrow.R
gemtc/src
gemtc/src/Makevars
gemtc/src/rank.c
gemtc/NAMESPACE
gemtc/NEWS
gemtc/data
gemtc/data/smoking.rdata
gemtc/data/depression.rdata
gemtc/data/dietfat.rdata
gemtc/data/certolizumab.rdata
gemtc/data/parkinson-diff.rdata
gemtc/data/hfPrevention.rdata
gemtc/data/parkinson-shared.rdata
gemtc/data/atrialFibrillation.rdata
gemtc/data/parkinson.rdata
gemtc/data/thrombolytic.rdata
gemtc/data/blocker.rdata
gemtc/R
gemtc/R/inits.R
gemtc/R/mtc.model.regression.R
gemtc/R/mtc.model.nodesplit.R
gemtc/R/mtc.data.studyrow.R
gemtc/R/regression.R
gemtc/R/arrayize.R
gemtc/R/priors.R
gemtc/R/anohe.R
gemtc/R/mtc.model.consistency.R
gemtc/R/stopIfNotConsistent.R
gemtc/R/mtc.model.R
gemtc/R/nodesplit.R
gemtc/R/data.R
gemtc/R/solveLP.R
gemtc/R/template.R
gemtc/R/code.R
gemtc/R/mtc.model.use.R
gemtc/R/ll-helper.counts.R
gemtc/R/relative.effect.R
gemtc/R/rank.probability.R
gemtc/R/ll.call.R
gemtc/R/likelihoods.R
gemtc/R/mtc.network.xml.R
gemtc/R/deviance.R
gemtc/R/mtc.network.R
gemtc/R/mtc.run.R
gemtc/R/ll.binom.log.R
gemtc/R/ll.poisson.log.R
gemtc/R/mtc.hy.prior.R
gemtc/R/ll.binom.logit.R
gemtc/R/relative.effect.table.R
gemtc/R/mtc.result.R
gemtc/R/mtc.model.ume.R
gemtc/R/blobbogram.R
gemtc/R/ll.normal.identity.R
gemtc/R/plotCovariateEffect.R
gemtc/R/minimum.diameter.spanning.tree.R
gemtc/R/ll.binom.cloglog.R
gemtc/R/forest.R
gemtc/MD5
gemtc/DESCRIPTION
gemtc/man
gemtc/man/rank.probability.Rd
gemtc/man/figures
gemtc/man/figures/parkinson.png
gemtc/man/figures/parkinson.pdf
gemtc/man/thrombolytic.Rd
gemtc/man/hfPrevention.Rd
gemtc/man/mtc.deviance.Rd
gemtc/man/mtc.run.Rd
gemtc/man/mtc.nodesplit.Rd
gemtc/man/mtc.anohe.Rd
gemtc/man/dietfat.Rd
gemtc/man/blocker.Rd
gemtc/man/read.mtc.network.Rd
gemtc/man/mtc.network.Rd
gemtc/man/ll.call.Rd
gemtc/man/mtc.hy.prior.Rd
gemtc/man/relative.effect.table.Rd
gemtc/man/depression.Rd
gemtc/man/certolizumab.Rd
gemtc/man/gemtc-package.Rd
gemtc/man/mtc.model.Rd
gemtc/man/smoking.Rd
gemtc/man/atrialFibrillation.Rd
gemtc/man/mtc.data.studyrow.Rd
gemtc/man/relative.effect.Rd
gemtc/man/blobbogram.Rd
gemtc/man/parkinson.Rd
gemtc/man/plotCovariateEffect.Rd