gemtc: Network Meta-Analysis Using Bayesian Methods

Network meta-analyses (mixed treatment comparisons) in the Bayesian framework using JAGS. Includes methods to assess heterogeneity and inconsistency, and a number of standard visualizations.

AuthorGert van Valkenhoef, Joel Kuiper
Date of publication2016-12-23 11:56:29
MaintainerGert van Valkenhoef <gert@gertvv.nl>
LicenseGPL-3
Version0.8-2
http://github.com/gertvv/gemtc

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Files in this package

gemtc
gemtc/inst
gemtc/inst/gemtc.likelihood.poisson.txt
gemtc/inst/gemtc.fixedeffect.txt
gemtc/inst/gemtc.randomeffects.txt
gemtc/inst/gemtc.releffect.likelihood.rm.txt
gemtc/inst/gemtc.model.use.template.txt
gemtc/inst/gemtc.armeffect.likelihood.txt
gemtc/inst/gemtc.releffect.likelihood.r2.txt
gemtc/inst/gemtc.likelihood.normal.txt
gemtc/inst/gemtc.likelihood.normal.power.txt
gemtc/inst/gemtc.likelihood.poisson.power.txt
gemtc/inst/gemtc.releffect.likelihood.power.rm.txt
gemtc/inst/gemtc.likelihood.binom.txt
gemtc/inst/extdata
gemtc/inst/extdata/luades-smoking.gemtc
gemtc/inst/extdata/parkinson.ns.rds
gemtc/inst/extdata/parkinson.gemtc
gemtc/inst/extdata/luades-smoking.samples.gz
gemtc/inst/gemtc.releffect.likelihood.power.r2.txt
gemtc/inst/gemtc.model.template.txt
gemtc/inst/gemtc.likelihood.binom.power.txt
gemtc/tests
gemtc/tests/data
gemtc/tests/data/studyrow
gemtc/tests/data/studyrow/tsd2-7.data.txt
gemtc/tests/data/studyrow/tsd2-2.data.txt
gemtc/tests/data/studyrow/tsd2-5.data.txt
gemtc/tests/data/studyrow/tsd2-5.out.txt
gemtc/tests/data/studyrow/tsd2-3.out.txt
gemtc/tests/data/studyrow/tsd2-2.out.txt
gemtc/tests/data/studyrow/tsd2-8.data1.txt
gemtc/tests/data/studyrow/tsd2-8.out1.txt
gemtc/tests/data/studyrow/tsd2-8.out2.txt
gemtc/tests/data/studyrow/tsd2-8.data2.txt
gemtc/tests/data/studyrow/tsd2-1.data.txt
gemtc/tests/data/studyrow/tsd2-1.out.txt
gemtc/tests/data/studyrow/tsd2-7.out.txt
gemtc/tests/data/studyrow/tsd2-3.data.txt
gemtc/tests/data/riskratio.data.txt
gemtc/tests/data/diabetes-surv.summaries.txt
gemtc/tests/data/welton-diastolic.summaries.txt
gemtc/tests/data/diabetes-surv.data.txt
gemtc/tests/data/parkinson-shared.summaries.txt
gemtc/tests/data/dietfat.re.summaries.txt
gemtc/tests/data/luades-thrombolytic.summaries.txt
gemtc/tests/data/smoking-ume.data.txt
gemtc/tests/data/diabetes-surv.fe.summaries.txt
gemtc/tests/data/riskratio.summaries.txt
gemtc/tests/data/welton-cholesterol.summaries.txt
gemtc/tests/data/welton-cholesterol.gemtc
gemtc/tests/data/rr-pairwise.csv
gemtc/tests/data/ns-complex.csv
gemtc/tests/data/smoking-ume.summaries.txt
gemtc/tests/data/dietfat.fe.summaries.txt
gemtc/tests/data/anohe-breaking.gemtc
gemtc/tests/data/cipriani-efficacy.summaries.txt
gemtc/tests/data/parkinson-diff.summaries.txt
gemtc/tests/data/luades-smoking.summaries.txt
gemtc/tests/data/welton-diastolic.gemtc
gemtc/tests/data/parkinson.summaries.txt
gemtc/tests/data/welton-systolic.gemtc
gemtc/tests/data/welton-systolic.summaries.txt
gemtc/tests/test.R
gemtc/tests/testthat
gemtc/tests/testthat/test-unit-read.mtc.network.R
gemtc/tests/testthat/test-unit-inits.to.monitors.R
gemtc/tests/testthat/test-unit-arrayize.R
gemtc/tests/testthat/test-regress-anohe.R
gemtc/tests/testthat/test-unit-template.R
gemtc/tests/testthat/test-validate-welton-diastolic.R
gemtc/tests/testthat/test-unit-minimum.diameter.spanning.tree.R
gemtc/tests/testthat/test-unit-mtc.model_duparm.R
gemtc/tests/testthat/test-unit-ll.binom.logit.R
gemtc/tests/testthat/test-unit-regression.R
gemtc/tests/testthat/test-validate-parkinson-diff.R
gemtc/tests/testthat/test-unit-mtc.model.ume.R
gemtc/tests/testthat/test-validate-parkinson-shared.R
gemtc/tests/testthat/test-validate-riskratio.R
gemtc/tests/testthat/test-unit-mtc.model.use.R
gemtc/tests/testthat/test-unit-mtc.model_inits.R
gemtc/tests/testthat/helper-validate.R
gemtc/tests/testthat/test-unit-mtc.model.graph.R
gemtc/tests/testthat/test-unit-ll.binom.log.R
gemtc/tests/testthat/test-validate-welton-systolic.R
gemtc/tests/testthat/test-validate-dietfat-fe.R
gemtc/tests/testthat/test-validate-diabetes-surv-fe.R
gemtc/tests/testthat/helper-regress.R
gemtc/tests/testthat/test-unit-ll.poisson.log.R
gemtc/tests/testthat/test-unit-mtc.nr.comparisons.R
gemtc/tests/testthat/test-unit-ll.R
gemtc/tests/testthat/test-regress-models.R
gemtc/tests/testthat/test-unit-mtc.network_data.re.R
gemtc/tests/testthat/test-validate-diabetes-surv.R
gemtc/tests/testthat/test-validate-luades-smoking.R
gemtc/tests/testthat/test-validate-dietfat-re.R
gemtc/tests/testthat/test-unit-nodesplit.R
gemtc/tests/testthat/test-unit-has.indirect.evidence.R
gemtc/tests/testthat/test-validate-smoking-ume.R
gemtc/tests/testthat/test-validate-luades-thrombolytic.R
gemtc/tests/testthat/test-unit-decompose.R
gemtc/tests/testthat/test-unit-mtc.model_data.R
gemtc/tests/testthat/test-unit-mtc.hy.prior.R
gemtc/tests/testthat/test-unit-mtc.study.treatment.matrix.R
gemtc/tests/testthat/test-unit-mtc.model.nodesplit.R
gemtc/tests/testthat/test-unit-allpairs.R
gemtc/tests/testthat/test-unit-relative.effect.R
gemtc/tests/testthat/test-validate-welton-cholesterol.R
gemtc/tests/testthat/test-validate-cipriani-efficacy.R
gemtc/tests/testthat/test-validate-parkinson.R
gemtc/tests/testthat/test-unit-mtc.model_columns.R
gemtc/tests/testthat/test-unit-mtc.model.consistency.R
gemtc/tests/testthat/test-unit-relative.effect.table.R
gemtc/tests/testthat/test-unit-studyrow.R
gemtc/src
gemtc/src/Makevars
gemtc/src/rank.c
gemtc/NAMESPACE
gemtc/NEWS
gemtc/data
gemtc/data/smoking.rdata
gemtc/data/depression.rdata
gemtc/data/dietfat.rdata
gemtc/data/certolizumab.rdata
gemtc/data/parkinson-diff.rdata
gemtc/data/hfPrevention.rdata
gemtc/data/parkinson-shared.rdata
gemtc/data/atrialFibrillation.rdata
gemtc/data/parkinson.rdata
gemtc/data/thrombolytic.rdata
gemtc/data/blocker.rdata
gemtc/R
gemtc/R/inits.R gemtc/R/mtc.model.regression.R gemtc/R/mtc.model.nodesplit.R gemtc/R/mtc.data.studyrow.R gemtc/R/regression.R gemtc/R/arrayize.R gemtc/R/priors.R gemtc/R/anohe.R gemtc/R/mtc.model.consistency.R gemtc/R/stopIfNotConsistent.R gemtc/R/mtc.model.R gemtc/R/nodesplit.R gemtc/R/data.R gemtc/R/solveLP.R gemtc/R/template.R gemtc/R/code.R gemtc/R/mtc.model.use.R gemtc/R/ll-helper.counts.R gemtc/R/relative.effect.R gemtc/R/rank.probability.R gemtc/R/ll.call.R gemtc/R/likelihoods.R gemtc/R/mtc.network.xml.R gemtc/R/deviance.R gemtc/R/mtc.network.R gemtc/R/mtc.run.R gemtc/R/ll.binom.log.R gemtc/R/ll.poisson.log.R gemtc/R/mtc.hy.prior.R gemtc/R/ll.binom.logit.R gemtc/R/relative.effect.table.R gemtc/R/mtc.result.R gemtc/R/mtc.model.ume.R gemtc/R/blobbogram.R gemtc/R/ll.normal.identity.R gemtc/R/plotCovariateEffect.R gemtc/R/minimum.diameter.spanning.tree.R gemtc/R/ll.binom.cloglog.R gemtc/R/forest.R
gemtc/MD5
gemtc/DESCRIPTION
gemtc/man
gemtc/man/rank.probability.Rd
gemtc/man/figures
gemtc/man/figures/parkinson.png
gemtc/man/figures/parkinson.pdf
gemtc/man/thrombolytic.Rd gemtc/man/hfPrevention.Rd gemtc/man/mtc.deviance.Rd gemtc/man/mtc.run.Rd gemtc/man/mtc.nodesplit.Rd gemtc/man/mtc.anohe.Rd gemtc/man/dietfat.Rd gemtc/man/blocker.Rd gemtc/man/read.mtc.network.Rd gemtc/man/mtc.network.Rd gemtc/man/ll.call.Rd gemtc/man/mtc.hy.prior.Rd gemtc/man/relative.effect.table.Rd gemtc/man/depression.Rd gemtc/man/certolizumab.Rd gemtc/man/gemtc-package.Rd gemtc/man/mtc.model.Rd gemtc/man/smoking.Rd gemtc/man/atrialFibrillation.Rd gemtc/man/mtc.data.studyrow.Rd gemtc/man/relative.effect.Rd gemtc/man/blobbogram.Rd gemtc/man/parkinson.Rd gemtc/man/plotCovariateEffect.Rd

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