genMOSS: Functions for the Bayesian Analysis of GWAS Data

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Implements the Mode Oriented Stochastic Search (MOSS) algorithm as well as a simple moving window approach to look for combinations of SNPs that are associated with a response.

Author
Matthew Friedlander, Adrian Dobra, Helene Massam, and Laurent Briollais
Date of publication
2014-12-03 07:54:14
Maintainer
Matthew Friedlander <friedlander.matthew@gmail.com>
License
GPL (>= 2)
Version
1.2

View on CRAN

Man pages

genMOSS
Functions for the Bayesian analysis of GWAS data
MOSS_GWAS
Analyzing GWAS data using MOSS
mWindow
Analyzing GWAS data in sequence over a moving window
recode_data
Finding the optimal coding of diallelic SNPs
simuCC
A simulated case-control sample.

Files in this package

genMOSS
genMOSS/inst
genMOSS/inst/doc
genMOSS/inst/doc/User_manual.Rnw
genMOSS/inst/doc/User_manual.pdf
genMOSS/src
genMOSS/src/c_code.c
genMOSS/NAMESPACE
genMOSS/data
genMOSS/data/datalist
genMOSS/data/simuCC.rda
genMOSS/R
genMOSS/R/prettyFormula.R
genMOSS/R/MOSS_GWAS_main.R
genMOSS/R/fitInteractionModels.R
genMOSS/R/getSubsets.R
genMOSS/R/check_args_recode_data.R
genMOSS/R/findDualGenerators.R
genMOSS/R/recode_data.R
genMOSS/R/recode_data_main.R
genMOSS/R/check_args_mWindow.R
genMOSS/R/binToDec.R
genMOSS/R/check_args_MOSS_GWAS.R
genMOSS/R/findGenerators.R
genMOSS/R/findIndex.R
genMOSS/R/repRow.R
genMOSS/R/MOSS_GWAS.R
genMOSS/R/cvFunc.R
genMOSS/R/mWindow.R
genMOSS/R/makeModelHierarchical.R
genMOSS/R/findHierNeighbours.R
genMOSS/R/MOSS_Hierarchical.R
genMOSS/R/findModel.R
genMOSS/R/optimal_coding.R
genMOSS/R/decToBin.R
genMOSS/R/logLaplace.R
genMOSS/R/findFormula.R
genMOSS/R/mWindow_main.R
genMOSS/R/findLogMargLik.R
genMOSS/R/randomHierModel.R
genMOSS/R/prettyHierFormula.R
genMOSS/R/findNeighbours.R
genMOSS/vignettes
genMOSS/vignettes/User_manual.Rnw
genMOSS/MD5
genMOSS/build
genMOSS/build/vignette.rds
genMOSS/DESCRIPTION
genMOSS/man
genMOSS/man/MOSS_GWAS.Rd
genMOSS/man/simuCC.Rd
genMOSS/man/genMOSS.Rd
genMOSS/man/recode_data.Rd
genMOSS/man/mWindow.Rd