Man pages for genio
Genetics Input/Output Functions
| count_lines | Count the number of lines of a file |
| delete_files_grm | Delete all GCTA binary GRM files |
| delete_files_phen | Delete PHEN files |
| delete_files_plink | Delete all Plink binary files |
| genio | genio (GENetics I/O): A package for reading and writing... |
| geno_to_char | Convert a genotype matrix from numeric to character codes |
| ind_to_fam | Convert an Eigenstrat IND tibble into a Plink FAM tibble |
| make_bim | Create a Plink BIM tibble |
| make_fam | Create a Plink FAM tibble |
| read_bed | Read a genotype matrix in Plink BED format |
| read_bim | Read Plink *.bim files |
| read_eigenvec | Read Plink eigenvec file |
| read_fam | Read Plink *.fam files |
| read_grm | Read GCTA GRM and related plink2 binary files |
| read_ind | Read Eigenstrat *.ind files |
| read_matrix | Read a numerical matrix file into an R matrix |
| read_phen | Read *.phen files |
| read_plink | Read genotype and sample data in a Plink BED/BIM/FAM file... |
| read_snp | Read Eigenstrat *.snp files |
| require_files_grm | Require that GCTA binary GRM files are present |
| require_files_phen | Require that PHEN file is present |
| require_files_plink | Require that Plink binary files are present |
| sex_to_char | Convert integer sex codes to character codes |
| sex_to_int | Convert character sex codes to integer codes |
| tidy_kinship | Create a tidy version of a kinship matrix |
| write_bed | Write a genotype matrix into Plink BED format |
| write_bim | Write Plink *.bim files |
| write_eigenvec | Write eigenvectors table into a Plink-format file |
| write_fam | Write Plink *.fam files |
| write_grm | Write GCTA GRM and related plink2 binary files |
| write_ind | Write Eigenstrat *.ind files |
| write_matrix | Write a matrix to a file without row or column names |
| write_phen | Write *.phen files |
| write_plink | Write genotype and sample data into a Plink BED/BIM/FAM file... |
| write_snp | Write Eigenstrat *.snp files |
