genoPlotR: Plot Publication-Grade Gene and Genome Maps

Draws gene or genome maps and comparisons between these, in a publication-grade manner. Starting from simple, common files, it will draw postscript or pdf files that can be sent as such to journals.

AuthorLionel Guy <lionel.guy@imbim.uu.se>
Date of publication2015-07-08 13:21:55
MaintainerLionel Guy <lionel.guy@imbim.uu.se>
LicenseGPL (>= 2)
Version0.8.4
http://genoplotr.r-forge.r-project.org/

View on CRAN

Files in this package

genoPlotR
genoPlotR/inst
genoPlotR/inst/CITATION
genoPlotR/inst/extdata
genoPlotR/inst/extdata/barto.backbone
genoPlotR/inst/extdata/BH_vs_BQ.blastn.tab
genoPlotR/inst/extdata/barto.guide_tree
genoPlotR/inst/extdata/barto.sh
genoPlotR/inst/extdata/comparison2.tab
genoPlotR/inst/extdata/dna_seg3.tab
genoPlotR/inst/extdata/BG_plasmid.embl
genoPlotR/inst/extdata/BG_plasmid.gbk
genoPlotR/inst/extdata/BQ.ptt
genoPlotR/inst/extdata/mauve.sh
genoPlotR/inst/doc
genoPlotR/inst/doc/genoPlotR.R
genoPlotR/inst/doc/Bioinformatics-2010-Guy-2334-5.pdf
genoPlotR/inst/doc/genoPlotR.Rnw
genoPlotR/inst/doc/genoPlotR.pdf
genoPlotR/NAMESPACE
genoPlotR/NEWS
genoPlotR/data
genoPlotR/data/barto.RData
genoPlotR/data/three_genes.RData
genoPlotR/data/chrY_subseg.RData
genoPlotR/data/mauve_bbone.RData
genoPlotR/R
genoPlotR/R/read_mauve_backbone.R genoPlotR/R/annotation.R genoPlotR/R/color_schemes.R genoPlotR/R/plot_helpers.R genoPlotR/R/comparison.R genoPlotR/R/generic.R genoPlotR/R/read_dna_seg.R genoPlotR/R/grobs.R genoPlotR/R/seg_plot.R genoPlotR/R/genoPlotR.R genoPlotR/R/read_comparison.R genoPlotR/R/minimize_comps.R genoPlotR/R/dna_seg.R genoPlotR/R/auto_annotate.R genoPlotR/R/similarity.R genoPlotR/R/gene_types.R genoPlotR/R/gene.R genoPlotR/R/phylog_grob.R
genoPlotR/vignettes
genoPlotR/vignettes/Bioinformatics-2010-Guy-2334-5.pdf
genoPlotR/vignettes/genoPlotR.Rnw
genoPlotR/MD5
genoPlotR/build
genoPlotR/build/vignette.rds
genoPlotR/DESCRIPTION
genoPlotR/man
genoPlotR/man/annotation.Rd genoPlotR/man/dna_seg.Rd genoPlotR/man/seg_plot.Rd genoPlotR/man/reverse.Rd genoPlotR/man/gene_types.Rd genoPlotR/man/chrY_subseg.Rd genoPlotR/man/middle.Rd genoPlotR/man/three_genes.Rd genoPlotR/man/barto.Rd genoPlotR/man/human_nt.Rd genoPlotR/man/comparison.Rd genoPlotR/man/apply_color_scheme.Rd genoPlotR/man/mauve_bbone.Rd genoPlotR/man/c.dna_seg.Rd genoPlotR/man/trim.Rd genoPlotR/man/auto_annotate.Rd genoPlotR/man/range.Rd genoPlotR/man/read_functions.Rd genoPlotR/man/genoPlotR-package.Rd genoPlotR/man/plot_gene_map.Rd genoPlotR/man/artemisColors.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.