print_geostan_fit: print or plot a fitted geostan model

In geostan: Bayesian Spatial Analysis

print or plot a fitted geostan model

Description

Print a summary of model results to the R console, or plot posterior distributions of model parameters.

Usage

## S3 method for class 'geostan_fit'
print(x, probs = c(0.025, 0.2, 0.5, 0.8, 0.975), digits = 3, pars = NULL, ...)

## S3 method for class 'geostan_fit'
plot(x, pars, plotfun = "hist", fill = "steelblue4", ...)

Arguments

x	A fitted model object of class geostan_fit.
probs	Argument passed to quantile; which quantiles to calculate and print.
digits	number of digits to print
pars	parameters to include; a character string (or vector) of parameter names.
...	additional arguments to rstan::plot or rstan::print.stanfit.
plotfun	Argument passed to rstan::plot. Options include histograms ("hist"), MCMC traceplots ("trace"), and density plots ("dens"). Diagnostic plots are also available such as Rhat statistics ("rhat"), effective sample size ("ess"), and MCMC autocorrelation ("ac").
fill	fill color for histograms and density plots.

Value

The print methods writes text to the console to summarize model results. The plot method resturns a ggplot (from rstan::plot for stanfit objects).

Examples

data(georgia)
georgia$income <- georgia$income/1e3

fit <- stan_glm(deaths.male ~ offset(log(pop.at.risk.male)) + log(income),
                centerx = TRUE,
                data = georgia,
                family = poisson(),
                chains = 2, iter = 600) # for speed only


# print and plot results
print(fit)
plot(fit)

geostan documentation built on April 3, 2025, 10:04 p.m.