gboot_solow: Solow bootstrap

In geotoolsR: Tools to Improve the Use of Geostatistic

Solow bootstrap

Description

Performs a spatial boostrap proposed by Solow(1985).

Usage

gboot_solow(data,var,model,B)

Arguments

data	object of the class geodata.
var	object of the class variogram.
model	object of the class variomodel.
B	number of the bootstrap that will be performed (default B=1000).

Details

The basic idea involves transforming correlated observation to uncorrelated quantities, forming a bootstrap sample from these quantities, and transforming back to a bootstrap sample form the original observations (SOLOW, 1985). Suppose that Z_n is an n vector of observations from a realization of a second-order stationary random process, Z(s_i), and the covariance matrix for Z_n is C. Suppose further that E(Z_n)={0_n}, where {0_n} is an n vector of zeroes. In practice Z_n can be centered by subtracting an estimate of the stationary mean from each observation. So, the steps of the algorithm are:

1. Obtain C;

2. Apply the Cholesky decomposition in C, obtaining C=LL^t, where L is lower triangular;

3. Obtain U_n=L^{-1}Z_n;

4. Sample with replacement {U^*}_n from U_n - \bar U_n;

5. The new data will be {Z^*}_n=L{U^*}_n;

6. Calculate the new variogram;

7. Calculate and save the statistics of interest;

8. Return to step 4 and repeat the process at least 1000 times.

Value

variogram_boot gives the variogram of each bootstrap.

variogram_or gives the original variogram.

pars_boot gives the estimatives of the nugget, sill, contribution, range and practical range for each bootstrap.

pars_or gives the original estimatives of the nugget, sill, contribution, range and practical range.

Invalid arguments will return an error message.

Author(s)

Diogo Francisco Rossoni [e-mail]

Vinicius Basseto Felix [e-mail]

References

Solow, A. R. (1985). Bootstrapping correlated data. Journal of the International Association for Mathematical Geology, 17(7), 769-775. https://doi.org/10.1007/BF01031616

Examples

# Example 1

## transforming the data.frame in an object of class geodata
data<- as.geodata(soilmoisture)

points(data) ## data visualization

var<- variog(data, max.dist = 140) ## Obtaining the variogram
plot(var)

## Fitting the model
mod<- variofit(var,ini.cov.pars = c(2,80),nugget = 2,cov.model = "sph")
lines(mod, col=2, lwd=2) ##fitted model

## Bootstrap procedure

boot<- gboot_solow(data,var,mod,B=10)
## For better Confidence interval, try B=1000

gboot_CI(boot,digits = 4) ## Bootstrap Confidence Interval

gboot_plot(boot) ## Bootstrap Variogram plot


# Example 2

## transforming the data.frame in an object of class geodata
data<- as.geodata(NVDI)

points(data) ## data visualization

var<- variog(data, max.dist = 18) ## Obtaining the variogram
plot(var)

## Fitting the model
mod<- variofit(var,ini.cov.pars = c(0.003,6),nugget = 0.003,cov.model = "gaus")
lines(mod, col=2, lwd=2) ##fitted model

## Bootstrap procedure

boot<- gboot_solow(data,var,mod,B=10)
## For better Confidence interval, try B=1000

gboot_CI(boot,digits = 4) ## Bootstrap Confidence Interval

gboot_plot(boot) ## Bootstrap Variogram plot

geotoolsR documentation built on Sept. 11, 2024, 9:34 p.m.