ggalign
A 'ggplot2' Extension for Composable Visualization

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ggalign: A 'ggplot2' Extension for Composable Visualization
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API

API for ggalign
A 'ggplot2' Extension for Composable Visualization

Global functions
.align_hclust Source code
.link_draw Man page Source code
.mark_draw Man page Source code
.memo_order Source code
.onAttach Source code
.onLoad Source code
.purrr_imap_mold Source code
.purrr_pmap_mold Source code
.rlang_allow_number Source code
.rlang_as_friendly_type Source code
.rlang_check_bool Source code
.rlang_check_number Source code
.rlang_check_string Source code
.rlang_stop_unexpected_typeof Source code
.standalone_oxford_comma Source code
.stop_not_number Source code
CraftAlign Man page
Craftsman Man page
Layout-subset Man page
LayoutProto Man page
Patch Man page
Scheme Man page
Schemes Man page
`$<-.Craftsman` Source code
`$<-.ggalign_pair_links` Source code
`%nest%` Source code
`%|w|%` Source code
`%||%` Source code
`[<-.ggalign_pair_links` Source code
`[[<-.ggalign_pair_links` Source code
`as.double.ggalign::GridUnit` Source code
`ggalign_stat.ggalign::CraftBox` Source code
`ggalign_stat.ggalign::QuadLayout` Source code
`ggalign_stat.ggalign::StackLayout` Source code
`object_name.ggalign::CircleLayout` Source code
`object_name.ggalign::CraftBox` Source code
`object_name.ggalign::QuadLayout` Source code
`object_name.ggalign::StackLayout` Source code
`quad_body_add.ggalign::Scheme` Source code
`quad_build.ggalign::HeatmapLayout` Source code
`quad_build.ggalign::QuadLayout` Source code
`raster_magick.ggalign::ChainLayout` Source code
`raster_magick.ggalign::CraftBox` Source code
`raster_magick.ggalign::QuadLayout` Source code
`rasterise.ggalign::ChainLayout` Source code
`rasterise.ggalign::CraftBox` Source code
`rasterise.ggalign::QuadLayout` Source code
`resolve_stack_layout.ggalign::StackCross` Source code
`resolve_stack_layout.ggalign::StackLayout` Source code
`stack_composer_add.ggalign::CraftBox` Source code
`stack_composer_add.ggalign::QuadLayout` Source code
active Man page
add_class Source code
add_strips Source code
add_wrapped_inset Source code
add_wrapped_insets Source code
align Man page Source code
align_circle_continuous_facet Source code
align_circle_discrete_facet Source code
align_circle_facet Source code
align_dendro Man page Source code
align_discrete_scales Source code
align_group Man page Source code
align_hclust Man page Source code
align_kmeans Man page Source code
align_order Man page Source code
align_order2 Man page Source code
align_panel Man page Source code
align_phylo Man page Source code
align_plots Man page
align_quad_facet Source code
align_stack_continuous_facet Source code
align_stack_discrete_facet Source code
align_stack_facet Source code
align_theme_axis Source code
alignpatches Man page
allow_lambda Source code
allow_what_type Source code
anno_bottom Man page Source code
anno_left Man page Source code
anno_right Man page Source code
anno_top Man page Source code
area Man page Source code
as_areas Source code
as_areas.character Source code
as_areas.default Source code
as_areas.ggalign_area Source code
as_areas.patch_area Source code
as_data_frame0 Source code
as_grob Man page Source code
as_grob.Heatmap Man page Source code
as_grob.HeatmapAnnotation Man page
as_grob.HeatmapList Man page
as_grob.default Source code
as_grob.formula Man page Source code
as_grob.function Man page Source code
as_grob.gList Man page Source code
as_grob.ggalign::alignpatches Man page
as_grob.ggplot Man page
as_grob.grob Man page Source code
as_grob.patch Man page Source code
as_grob.patch_ggplot Man page Source code
as_grob.patchwork Man page Source code
as_grob.pheatmap Man page Source code
as_grob.recordedplot Man page Source code
as_grob.trellis Man page Source code
as_obs_link Source code
as_obs_link.AsIs Source code
as_obs_link.NULL Source code
as_obs_link.character Source code
as_obs_link.default Source code
as_obs_link.list Source code
as_obs_link.numeric Source code
as_pair_link Source code
assemble_box Source code
assemble_guides Source code
assert_ Source code
assert_active Source code
assert_bool Source code
assert_character Source code
assert_genomic_data Source code
assert_gp Source code
assert_guides Source code
assert_layout_guides Source code
assert_layout_position Source code
assert_limits Source code
assert_logical Source code
assert_mapping Source code
assert_mismatch_nobs Source code
assert_number_decimal Source code
assert_number_whole Source code
assert_obs_size Source code
assert_position Source code
assert_reorder Source code
assert_s3_class Source code
assert_string Source code
assert_sub_split Source code
c.ggalign_area Source code
case_when Source code
chain_add_box Source code
chain_box_add Source code
chain_propagate Source code
check_direction Source code
check_order Source code
check_scheme_data Source code
check_size Source code
check_stack_context Source code
check_stack_sizes Source code
circle_continuous Man page Source code
circle_continuous.default Source code
circle_continuous.function Source code
circle_discrete Man page Source code
circle_discrete.default Source code
circle_discrete.function Source code
circle_genomic Man page Source code
circle_genomic.NULL Source code
circle_genomic.character Source code
circle_genomic.default Source code
circle_layout Man page Source code
circle_panel_params Source code
circle_switch Man page Source code
coalesce Source code
code_quote Source code
collapse_guides Source code
column_to_rownames Source code
compact_facets Source code
complete_guide_theme Source code
compute_null_height Source code
compute_null_unit Source code
compute_null_width Source code
continuous_limits Man page Source code
coord_circle Man page Source code
create_area Source code
create_layout_tagger Source code
cross Source code
cross_join Source code
cross_link Man page Source code
cross_mark Man page Source code
cross_none Man page Source code
cutree_k_to_h Source code
data_frame0 Source code
default_expansion Source code
default_schemes Source code
default_theme Source code
defer Source code
deframe Source code
deparse_link Source code
deparse_link2 Source code
deparse_link2.AsIs Source code
deparse_link2.NULL Source code
deparse_link2.character Source code
deparse_link2.ggalign_pair_link Source code
deparse_link2.ggalign_range_link Source code
deparse_link2.integer Source code
deparse_link2.list Source code
deparse_link2.waiver Source code
discrete_domain_update Source code
draw_geom_draw Source code
draw_key_gshape Man page Source code
draw_setup_data Source code
element_lengths Source code
element_rep Man page Source code
element_rep_len Man page Source code
element_vec Man page Source code
element_vec_fields Man page
element_vec_recycle Man page Source code
element_vec_rep Man page Source code
element_vec_rep_each Man page Source code
element_vec_slice Man page Source code
enframe Source code
ensure_grob Source code
facet_sector Man page Source code
fct_rev Source code
find_strip_pos Source code
fn_body_append Source code
format_object_name Source code
fortify_data_frame Man page Source code
fortify_data_frame.DelayedMatrix Man page Source code
fortify_data_frame.GRanges Man page Source code
fortify_data_frame.Matrix Man page Source code
fortify_data_frame.character Man page Source code
fortify_data_frame.complex Man page
fortify_data_frame.default Man page Source code
fortify_data_frame.dendrogram Man page Source code
fortify_data_frame.factor Man page
fortify_data_frame.ggalign_tune Source code
fortify_data_frame.hclust Man page Source code
fortify_data_frame.logical Man page
fortify_data_frame.matrix Man page Source code
fortify_data_frame.numeric Man page
fortify_data_frame.phylo Man page Source code
fortify_data_frame.waiver Source code
fortify_matrix Man page Source code
fortify_matrix.GISTIC Man page Source code
fortify_matrix.MAF Man page Source code
fortify_matrix.MAF_pathways Man page Source code
fortify_matrix.default Man page Source code
fortify_matrix.formula Source code
fortify_matrix.ggalign_tune Source code
fortify_matrix.list Man page
fortify_matrix.list_upset Man page Source code
fortify_matrix.matrix Man page
fortify_matrix.matrix_oncoplot Man page Source code
fortify_matrix.matrix_upset Man page Source code
fortify_matrix.waiver Source code
free_align Man page Source code
free_align.default Source code
free_align.ggalign_free_align Source code
free_align.ggalign_free_border Source code
free_align.ggalign_free_lab Source code
free_align.ggalign_free_space Source code
free_border Man page Source code
free_border.default Source code
free_border.ggalign_free_align Source code
free_border.ggalign_free_border Source code
free_border.ggalign_free_lab Source code
free_guide Man page Source code
free_guide.default Source code
free_guide.ggalign_free_guide Source code
free_lab Man page Source code
free_lab.default Source code
free_lab.ggalign_free_align Source code
free_lab.ggalign_free_border Source code
free_lab.ggalign_free_lab Source code
free_space Man page Source code
free_space.default Source code
free_space.ggalign_free_align Source code
free_space.ggalign_free_space Source code
free_vp Man page Source code
free_vp.default Source code
free_vp.ggalign_free_vp Source code
full_join Source code
gather_guides Source code
genomic_density Man page Source code
genomic_dist Man page Source code
genomic_range Source code
geom_draw Man page Source code
geom_gshape Man page Source code
geom_magick Man page Source code
geom_pie Man page Source code
geom_rect3d Man page Source code
geom_subrect Man page Source code
geom_subtile Man page Source code
geom_tile3d Man page Source code
get_discrete_breaks Source code
get_discrete_labels Source code
ggadd_default Source code
ggalign Man page Source code
ggalign-package Man page
ggalignGrob Man page Source code
ggalign_attr Man page Source code
ggalign_attr_get Source code
ggalign_attr_remove Source code
ggalign_attr_set Source code
ggalign_build Source code
ggalign_data_restore Source code
ggalign_data_set Man page Source code
ggalign_gtable Source code
ggalign_gtable.gtable Source code
ggalign_lvls Man page Source code
ggalign_lvls_get Source code
ggalign_lvls_remove Source code
ggalign_lvls_set Source code
ggalign_stat Man page Source code
ggalign_stat.CraftAlign Source code
ggalign_stat.default Source code
ggalign_stat.ggalign::QuadLayout Man page
ggalign_stat.ggalign::StackLayout Man page
ggcross Man page Source code
ggfree Man page Source code
ggfree.default Man page Source code
ggfree.ggplot Source code
ggfree.uneval Source code
ggfun Source code
ggheatmap Man page
ggmark Man page Source code
ggoncoplot Man page Source code
ggoncoplot.NULL Source code
ggoncoplot.default Man page Source code
ggpanel Man page Source code
ggplot_add.FacetSector Source code
ggplot_build.ggalign_facet_sector_plot Source code
ggplot_build.ggalign_heatmap Source code
ggremove_margin Source code
ggside Man page
ggupset Man page Source code
ggupset.NULL Source code
ggupset.default Source code
gguse_data Source code
gguse_facet Source code
gguse_linear_coord Source code
ggwrap Man page Source code
gpar Man page
grid.draw.patch_ggplot Source code
grid_solve_loc Source code
grob_in_area Source code
gtable_trim_heights Source code
gtable_trim_widths Source code
guides_build Source code
has_s3_method Source code
hclust2 Man page Source code
heatmap_fill Source code
heatmap_layout Man page Source code
heatmap_layout.default Source code
hmanno Man page
if_else Source code
imap Source code
imap_chr Source code
imap_dbl Source code
imap_int Source code
imap_lgl Source code
inherit_parent_layout_schemes Source code
inherit_parent_layout_theme Source code
inner_join Source code
inset Man page
install_pkgs Source code
is.gList Source code
is.gTree Source code
is_absolute_unit Source code
is_active Source code
is_align_craftbox Source code
is_align_craftsman Source code
is_circle_layout Man page Source code
is_continuous_domain Source code
is_craftbox Source code
is_craftsman Source code
is_cross_craftbox Source code
is_cross_craftsman Source code
is_cross_layout Source code
is_discrete_domain Source code
is_ggheatmap Man page
is_heatmap_layout Man page Source code
is_horizontal Source code
is_layout Man page Source code
is_null_grob Source code
is_null_unit Source code
is_palette_unset Source code
is_quad_layout Man page Source code
is_range_link Source code
is_respect Source code
is_s3 Source code
is_scalar Source code
is_scalar_numeric Source code
is_stack_cross Man page Source code
is_stack_layout Man page Source code
is_theme_complete Source code
is_theme_unset Source code
is_vertical Source code
join_bind Source code
layer_order Man page
layout-operator Man page
layout_align Source code
layout_annotation Man page Source code
layout_design Man page
layout_expand Man page Source code
layout_tags Man page
layout_theme Man page
layout_theme_update Source code
layout_title Man page
left_join Source code
length.ggalign_area Source code
length.ggalign_pair_link Source code
liberate_area Source code
link_draw Man page Source code
link_line Man page Source code
link_tetragon Man page Source code
link_to_location Source code
link_to_location.AsIs Source code
link_to_location.NULL Source code
link_to_location.character Source code
link_to_location.ggalign_range_link Source code
link_to_location.integer Source code
link_to_location.list Source code
link_to_location.waiver Source code
list_transpose Source code
loc_device2vp Source code
loc_vp2device Source code
magickGrob Man page Source code
magickGrob.default Source code
magickGrob.gList Source code
magickGrob.grob Man page Source code
magickGrob.magickGrob Man page Source code
main_class Source code
makeContent.ggalignLinkTree Source code
makeContent.magickGrob Source code
makeContent.markGrob Source code
make_dendrogram_horizontal Source code
make_dist Source code
make_draw_grob Source code
make_link_index Source code
make_links_data Source code
make_order Source code
make_pair_link_index Source code
make_patch_table Source code
make_wrap Source code
make_wrapped_plot Source code
map Source code
map2 Source code
map2_chr Source code
map2_dbl Source code
map2_int Source code
map2_lgl Source code
map_chr Source code
map_dbl Source code
map_int Source code
map_lgl Source code
markGrob Source code
mark_draw Man page Source code
mark_line Man page Source code
mark_tetragon Man page Source code
mark_triangle Man page Source code
maybe_guide_box Source code
memo_order Man page Source code
merge_data_fn Source code
merge_dendrogram Source code
merge_mapping Source code
na_if Source code
names_or_index Source code
new_areas Source code
new_circle_layout Source code
new_craftbox Source code
new_free_gg Source code
new_pair_link Source code
new_pair_links Source code
new_quad_layout Source code
new_stack_layout Source code
new_theme_class Source code
new_tune Man page Source code
no_expansion Man page
obj_print_data.ggalign_area Source code
obj_print_data.ggalign_pair_link Source code
obj_print_data.ggalign_pair_links Source code
obj_print_footer.ggalign_area Source code
obj_print_footer.ggalign_pair_links Source code
obj_print_header.ggalign_pair_link Source code
obj_print_header.ggalign_pair_links Source code
obj_type_friendly Source code
obj_type_oo Source code
object_name Source code
object_name.AlignGg Source code
object_name.Craftsman Source code
object_name.CrossGg Source code
object_name.FreeGg Source code
object_name.MarkGg Source code
offscreen Source code
on_exit Source code
opposite_pos Source code
order2 Man page Source code
order2.dendrogram Man page Source code
order2.hclust Man page Source code
order2.memo_weights Man page Source code
order2.phylo Man page Source code
order2.ser_permutation Man page Source code
order2.ser_permutation_vector Man page Source code
override_call Source code
oxford_and Source code
oxford_comma Source code
oxford_or Source code
package_box Source code
pair_links Man page Source code
patch Man page Source code
patch.Heatmap Source code
patch.NULL Source code
patch.default Source code
patch.free_plot Source code
patch.ggalign_free_align Source code
patch.ggalign_free_border Source code
patch.ggalign_free_guide Source code
patch.ggalign_free_lab Source code
patch.ggalign_free_space Source code
patch.ggalign_free_vp Source code
patch.ggalign_mark Source code
patch.grob Source code
patch.patch Source code
patch.patchwork Source code
patch.pheatmap Source code
patch.spacer Source code
patch.wrapped_plot Source code
patch_title Man page
patch_titles Man page Source code
pkg_extdata Source code
pkg_namespace Source code
pkg_nm Source code
plot.ggalign_area Source code
plot_add_scheme Man page
plot_ideogram Man page Source code
pmap Source code
pmap_chr Source code
pmap_dbl Source code
pmap_int Source code
pmap_lgl Source code
print.ggalign_area Source code
print.ggalign_data Source code
print.ggalign_link_draw Source code
print.ggalign_mark_draw Source code
print.ggalign_pair_link Source code
print.ggalign_range_link Source code
print.ggalign_tune Source code
print.patch_ggplot Source code
prop_char_sets Source code
prop_domain Source code
prop_grid_unit Source code
prop_layout_theme Source code
prop_stack_layout Source code
quad_active Man page Source code
quad_alignb Man page
quad_alignh Man page Source code
quad_alignv Man page Source code
quad_and_add Source code
quad_anno Man page Source code
quad_body_add Source code
quad_body_add.Coord Source code
quad_body_add.default Source code
quad_body_add.layout_theme Source code
quad_build Source code
quad_build_data Source code
quad_continuous Man page Source code
quad_continuous.default Source code
quad_continuous.uneval Source code
quad_discrete Man page Source code
quad_discrete.default Source code
quad_discrete.uneval Source code
quad_free Man page
quad_init Man page Source code
quad_layout Man page Source code
quad_scope Man page
quad_scope_contexts Source code
quad_switch Man page Source code
quad_switch_anno Source code
quickdf Source code
range_link Man page Source code
raster_magick Man page Source code
raster_magick.Layer Source code
raster_magick.default Source code
raster_magick.ggplot Source code
raster_magick.grob Source code
raster_magick.list Source code
rd_chain_what Source code
rd_collect_family Source code
rd_gg_aesthetics Source code
rd_layout Source code
rd_layout_data Source code
rd_quad Source code
rd_quad_position Source code
read_example Man page Source code
recycle_each Source code
recycle_theme_axis Source code
recycle_whole Source code
reexports Man page
remove_class Source code
remove_rownames Source code
rename Source code
reorder_dendrogram Source code
reorder_index Source code
replace_na Source code
resolve_stack_layout Source code
reverse_continuous_axis Source code
reverse_trans Source code
right_join Source code
rownames_to_column Source code
save_png Source code
scale_gshape_discrete Source code
scale_gshape_manual Man page Source code
scale_z_binned Man page Source code
scale_z_continuous Man page Source code
scale_z_date Man page Source code
scale_z_datetime Man page Source code
scale_z_discrete Man page Source code
scale_z_ordinal Man page Source code
scheme_align Man page
scheme_data Man page
scheme_inherit Man page
scheme_init Man page
scheme_theme Man page
scheme_update Man page
schemes_get Source code
schemes_set Source code
setdiff_position Source code
setup_3d_data Source code
setup_discrete_limits Source code
setup_guides Source code
setup_patch_title Source code
setup_position Source code
setup_tick_length_element Source code
snake_class Source code
split_position Source code
stack_active Man page Source code
stack_align Man page
stack_alignh Man page
stack_alignv Man page
stack_build Source code
stack_composer Source code
stack_composer_add Source code
stack_composer_add.list Source code
stack_composer_add_plot Source code
stack_composer_align_plot Source code
stack_continuous Man page Source code
stack_continuous.default Source code
stack_continuous.function Source code
stack_continuoush Man page Source code
stack_continuousv Man page Source code
stack_cross Man page Source code
stack_cross.default Source code
stack_crossh Man page Source code
stack_crossv Man page Source code
stack_discrete Man page Source code
stack_discrete.default Source code
stack_discrete.function Source code
stack_discreteh Man page Source code
stack_discretev Man page Source code
stack_free Man page
stack_freeh Man page
stack_freev Man page
stack_genomic Man page Source code
stack_genomic.NULL Source code
stack_genomic.character Source code
stack_genomic.default Source code
stack_genomich Man page Source code
stack_genomicv Man page Source code
stack_horizontal Man page Source code
stack_layout Man page Source code
stack_switch Man page Source code
stack_vertical Man page Source code
standardized_gtable Man page
stop_input_type Source code
str_function Source code
str_nest Source code
subset_gt Source code
subset_theme_axis Source code
switch_chain_plot Source code
switch_direction Source code
switch_position Source code
table_add_tag Source code
table_sizes Source code
tag_theme Source code
theme_elements Source code
theme_no_axes Man page Source code
theme_no_strip Source code
theme_panel_border Source code
theme_vec Source code
to_coord_axis Source code
to_direction Source code
to_matrix_axis Source code
tree_branch_heights Source code
tree_one_node Source code
trim_area Source code
tune Man page Source code
tune.MAF Man page Source code
tune.list Man page Source code
tune.matrix Man page Source code
tune_data Man page Source code
union_position Source code
unit Man page
unname_grob Source code
unname_vp Source code
update_layout_schemes Source code
upset_line Source code
upset_point Source code
upset_rect Source code
use_github_release Source code
vec_cast.ggalign_pair_link.AsIs Source code
vec_cast.ggalign_pair_link.formula Source code
vec_cast.ggalign_pair_link.numeric Source code
vec_cast.ggalign_pair_links.list Source code
vec_proxy.ggalign_pair_link Source code
vec_ptype2.AsIs.ggalign_pair_link Source code
vec_ptype2.NULL.ggalign_pair_link Source code
vec_ptype2.character.ggalign_pair_link Source code
vec_ptype2.double.ggalign_pair_link Source code
vec_ptype2.formula.ggalign_pair_link Source code
vec_ptype2.ggalign_pair_link.AsIs Source code
vec_ptype2.ggalign_pair_link.NULL Source code
vec_ptype2.ggalign_pair_link.character Source code
vec_ptype2.ggalign_pair_link.double Source code
vec_ptype2.ggalign_pair_link.formula Source code
vec_ptype2.ggalign_pair_link.ggalign_pair_link Source code
vec_ptype2.ggalign_pair_link.ggalign_range_link Source code
vec_ptype2.ggalign_pair_link.integer Source code
vec_ptype2.ggalign_pair_link.list Source code
vec_ptype2.ggalign_pair_link.numeric Source code
vec_ptype2.ggalign_pair_link.waiver Source code
vec_ptype2.ggalign_pair_links.list Source code
vec_ptype2.ggalign_range_link.ggalign_pair_link Source code
vec_ptype2.integer.ggalign_pair_link Source code
vec_ptype2.list.ggalign_pair_link Source code
vec_ptype2.list.ggalign_pair_links Source code
vec_ptype2.numeric.ggalign_pair_link Source code
vec_ptype2.waiver.ggalign_pair_link Source code
vec_ptype_abbr.ggalign_area Source code
vec_type_friendly Source code
walk Source code
with_options Source code
with_quad Man page Source code
ggalign documentation built on Nov. 5, 2025, 7:16 p.m.

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