Files in ggcoverage
Visualize Genome Coverage with Various Annotations
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/theme_ggcoverage.R
R/geom_gc.R
R/FormatInput.R
R/global.R
R/geom_coverage.R
R/geom_ideogram.R
R/geom_gene.R
R/geom_peak.R
R/geom_base.R
R/geom_transcript.R
R/LoadTrack.R
R/ggcoverage.R
R/utils.R
inst/doc/ggcoverage.Rmd
inst/doc/ggcoverage.html
inst/doc/ggcoverage.R
inst/extdata/used_hg19.gtf
inst/extdata/ChIP-seq/consensus.peak
inst/extdata/ChIP-seq/Chr18_MCF7_ER_1.bw
inst/extdata/ChIP-seq/Chr18_MCF7_ER_3.bw
inst/extdata/ChIP-seq/Chr18_MCF7_ER_2.bw
inst/extdata/ChIP-seq/Chr18_MCF7_input.bw
inst/extdata/DNA-seq/CNV_example.txt
inst/extdata/DNA-seq/tumorA.chr4.selected.bam.bai
inst/extdata/DNA-seq/tumorA.chr4.selected.bam
inst/extdata/RNA-seq/ERR127302_chr14.bw
inst/extdata/RNA-seq/ERR127307_chr14.bw
inst/extdata/RNA-seq/meta_info.csv
inst/extdata/RNA-seq/ERR127306_chr14.bw
inst/extdata/RNA-seq/ERR127303_chr14.bw
build/vignette.rds
vignettes/ggcoverage.Rmd
man/theme_base2.Rd
man/theme_aa.Rd
man/geom_gc.Rd
man/geom_coverage.Rd
man/theme_coverage.Rd
man/geom_transcript.Rd
man/theme_transcript.Rd
man/geom_peak.Rd
man/geom_gene.Rd
man/theme_base.Rd
man/theme_peak.Rd
man/theme_ideogram.Rd
man/geom_ideogram.Rd
man/LoadTrackFile.Rd
man/FormatTrack.Rd
man/ggcoverage.Rd
man/theme_coverage2.Rd
man/geom_base.Rd
man/theme_gene.Rd
man/theme_gc.Rd
man/figures/README-ideogram_coverage_1-1.png
man/figures/README-peak_coverage-1.png
man/figures/README-base_aa_coverage-1.png
man/figures/README-base_color_scheme-1.png
man/figures/README-basic_coverage_2-1.png
man/figures/README-gene_coverage-1.png
man/figures/README-basic_coverage_dna-1.png
man/figures/ggcoverage.png
man/figures/README-aa_color_scheme-1.png
man/figures/README-basic_coverage-1.png
man/figures/README-ideogram_coverage_2-1.png
man/figures/README-transcript_coverage-1.png
man/figures/README-basic_coverage_chip-1.png
man/figures/README-gc_coverage-1.png
