FormatTrack: Prepare Input for Creating Coverage Plot.

In ggcoverage: Visualize Genome Coverage with Various Annotations

Prepare Input for Creating Coverage Plot.

Description

Prepare Input for Creating Coverage Plot.

Usage

FormatTrack(
  data,
  region = "chr14:21,677,306-21,737,601",
  gtf.gr = NULL,
  gene.name = "HNRNPC",
  gene.name.type = c("gene_name", "gene_id"),
  extend = 2000
)

Arguments

data	Track dataframe loaded by LoadTrackFile.
region	Region used to create coverage plot, eg: chr14:21,677,306-21,737,601 or chr14:21,677,306. Default: NULL.
gtf.gr	Granges object of GTF, created with import.gff. Default: NULL.
gene.name	The name of gene. Default: HNRNPC.
gene.name.type	Gene name type (filed of gtf.gr), chosen from gene_name and gene_id. Default: gene_name.
extend	Extend length of region. Default: 2000.

Value

A dataframe.

ggcoverage documentation built on Sept. 6, 2022, 9:06 a.m.