NEWS.md
In ggdiceplot: DicePlot Visualization for 'ggplot2'

ggdiceplot 1.2.0

Fixed dice not rendering with ggplot2 >= 4.0 — The drawDetails.DiceGrob S3 method was not registered in the package NAMESPACE, so grid never dispatched to the custom drawing code. Neither tiles nor pips were drawn. Fixed by adding S3method(grid::drawDetails, DiceGrob) to NAMESPACE via @exportS3Method.
Fixed invisible pips when fill is not mapped — When the fill aesthetic was not mapped (default NA), pip colour was also set to NA, making pips invisible. Pips now default to black when fill is unmapped.

pip_scale parameter — New argument to geom_dice() that controls pip diameter as a fraction (0–1) of the maximum available space inside each die face. When size is constant (not mapped), all pips are drawn at pip_scale × max_diameter. When size is mapped to a variable, pips scale between 25% and pip_scale of the maximum pip diameter. Set pip_scale = NULL to disable auto-scaling and use the raw size aesthetic (legacy behaviour). Default: 0.75.
Deferred rendering via DiceGrob — Pip sizing is now calculated at grid draw time rather than ggplot build time, so pip diameters adapt correctly to the final figure dimensions.
Scale expansion for edge tiles — setup_data now exposes xmin/xmax/ymin/ymax so ggplot2 trains axis scales to include the full tile area, preventing clipping of border tiles.
New datasets — sample_dice_large (480 rows, 60 taxa) and sample_dice_miRNA (~90 rows, miRNA dysregulation) are included for demonstrating high-density and categorical-fill use cases.

Default pip sizing changed — Pips are now auto-scaled to fill the die face via the new pip_scale parameter (default 0.75). In v1.0.0 pips used the raw size aesthetic (default 3), which often left excessive whitespace or caused pips to overflow tile borders at certain figure sizes. Migration: add pip_scale = NULL to your geom_dice() call to restore the exact v1.0.0 appearance.
Legend key for unmapped fill — When fill is not mapped, legend keys now draw a solid black dot instead of an empty circle, improving readability. This is a cosmetic change with no opt-out.
Axis scale expansion — Edge tiles are no longer clipped because setup_data now reports tile extents to ggplot2. Plots may show slightly more padding around the border compared to v1.0.0.

draw_panel signature changed — The method now takes explicit named arguments (na.rm, ndots, x_length, y_length, pip_scale) instead of params, .... Code that subclassed GeomDice or called draw_panel directly will need updating.

Sample datasets restructured:
- sample_dice_data1: 48 rows → 160 rows (8 taxa × 4 diseases × 5 specimens). Columns are the same but lfc and q may now contain NA.
- sample_dice_data2: 48 rows → 160 rows; the replicate column has been removed. Column count changed from 6 to 5. Scripts that reference sample_dice_data2$replicate or hard-code row counts from either dataset will break.
tibble is now a hard dependency — added to Imports for column_to_rownames() / remove_rownames().
Minimum R version raised to 4.1.0 (was 4.0.0). R 4.1 is required for the native pipe operator (|>) used internally.

LICENSE switched to CRAN-standard two-line format (YEAR / COPYRIGHT HOLDER).
.Rbuildignore added to exclude pixi, demo output, test scripts, and other non-package files from the R CMD build tarball.
data-raw/ directory created; dataset-generation scripts moved there from data/.
pixi.toml / pixi.lock added for reproducible environment management.
Demo scripts (create_demo_plots.R, test_simple_dice.R) rewritten to exercise the new pip_scale feature and run from the project root.
README updated with new examples, a parameter table, and the published Bioinformatics citation.
RoxygenNote bumped to 7.3.3.