ggenealogy: Visualization Tools for Genealogical Data

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Methods for searching through genealogical data and displaying the results. Plotting algorithms assist with data exploration and publication-quality image generation. Includes interactive genealogy visualization tools. Uses the Grammar of Graphics.

Author
Lindsay Rutter, Susan Vanderplas, Di Cook
Date of publication
2016-07-03 10:53:58
Maintainer
Lindsay Rutter <lrutter@iastate.edu>
License
GPL
Version
0.2.0

View on CRAN

Man pages

buildAncDesCoordDF
Returns the coordinate positions of all ancestors and...
buildAncDesTotalDF
Returns data frame with plot coordinates of all ancestors and...
buildAncList
Returns the ancestors of a particular variety (if they...
buildDesList
Returns the descendants of a particular variety (if they...
buildEdgeTotalDF
Build the edges in the genealogy graph.
buildMinusPathDF
Process the genealogy graph
buildPathDF
Build data frame for path representation
buildPlotTotalDF
Build all labels in the graph
buildSpreadTotalDF
Build a data frame where the varieties are spread so they do...
dfToIG
Process the genealogy graph
getAncestors
Returns a list of the ancestors of a particular variety (if...
getBasicStatistics
Determine basic statistics of the graph object
getChild
Returns the children of a particular variety (if they exist)
getDegree
Determine the degree between two varieties
getDescendants
Returns a list of the descendants of a particular variety (if...
getEdges
Returns edges (vertex names and edge weights) for the full...
getNodes
Returns the nodes for a full genealogy
getParent
Returns the parents of a particular variety (if they exist)
getPath
Determine the path between two varieties
getYear
Determine the year of a variety
isChild
Determine if a variety is a child of another
isParent
Determine if a variety is a parent of another
nodeToDF
Returns the data frame representation of all ancestors and...
plotAncDes
Returns the image object to show the ancestors and...
plotDegMatrix
Returns the image object to show the heat map of degrees...
plotPath
Construct the graphic object of the path
plotPathOnAll
Plot a path between two vertices over the full genealogy
plotYearMatrix
Returns the image object to show the heat map of years...
sbGeneal
Soybean data
statGeneal
Academic statistics data

Files in this package

ggenealogy
ggenealogy/inst
ggenealogy/inst/doc
ggenealogy/inst/doc/ggenealogy.Rnw
ggenealogy/inst/doc/ggenealogy.R
ggenealogy/inst/doc/ggenealogy.pdf
ggenealogy/NAMESPACE
ggenealogy/NEWS.md
ggenealogy/data
ggenealogy/data/sbGeneal.rda
ggenealogy/data/statGeneal.rda
ggenealogy/R
ggenealogy/R/data-statGeneal.R
ggenealogy/R/allFunctions.R
ggenealogy/R/data-sbGeneal.R
ggenealogy/vignettes
ggenealogy/vignettes/ggenealogy.Rnw
ggenealogy/vignettes/dCox.png
ggenealogy/README.md
ggenealogy/MD5
ggenealogy/build
ggenealogy/build/vignette.rds
ggenealogy/DESCRIPTION
ggenealogy/man
ggenealogy/man/getNodes.Rd
ggenealogy/man/buildPlotTotalDF.Rd
ggenealogy/man/buildDesList.Rd
ggenealogy/man/getDegree.Rd
ggenealogy/man/buildAncDesTotalDF.Rd
ggenealogy/man/plotAncDes.Rd
ggenealogy/man/getYear.Rd
ggenealogy/man/isParent.Rd
ggenealogy/man/getAncestors.Rd
ggenealogy/man/sbGeneal.Rd
ggenealogy/man/plotYearMatrix.Rd
ggenealogy/man/buildAncDesCoordDF.Rd
ggenealogy/man/statGeneal.Rd
ggenealogy/man/getBasicStatistics.Rd
ggenealogy/man/plotPath.Rd
ggenealogy/man/getChild.Rd
ggenealogy/man/nodeToDF.Rd
ggenealogy/man/getEdges.Rd
ggenealogy/man/buildEdgeTotalDF.Rd
ggenealogy/man/plotPathOnAll.Rd
ggenealogy/man/buildSpreadTotalDF.Rd
ggenealogy/man/getPath.Rd
ggenealogy/man/buildPathDF.Rd
ggenealogy/man/dfToIG.Rd
ggenealogy/man/buildAncList.Rd
ggenealogy/man/buildMinusPathDF.Rd
ggenealogy/man/plotDegMatrix.Rd
ggenealogy/man/getDescendants.Rd
ggenealogy/man/isChild.Rd
ggenealogy/man/getParent.Rd