ggenealogy: Visualization Tools for Genealogical Data
Version 0.3.0

Methods for searching through genealogical data and displaying the results. Plotting algorithms assist with data exploration and publication-quality image generation. Includes interactive genealogy visualization tools. Provides parsing and calculation methods for variables in descendant branches of interest. Uses the Grammar of Graphics.

AuthorLindsay Rutter, Susan Vanderplas, Di Cook
Date of publication2016-12-12 18:34:18
MaintainerLindsay Rutter <lrutter@iastate.edu>
LicenseGPL
Version0.3.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ggenealogy")

Getting started

README.md

Popular man pages

buildAncDesTotalDF: Returns data frame with plot coordinates of all ancestors and...
buildEdgeTotalDF: Build the edges in the genealogy graph.
buildPathDF: Build data frame for path representation
buildSpreadTotalDF: Build a data frame where the varieties are spread so they do...
getDegree: Determine the degree between two varieties
getVariable: Determine the date of a variety
sbGeneal: Soybean data
See all...

All man pages Function index File listing

Man pages

buildAncDesCoordDF: Returns the coordinate positions of all ancestors and...
buildAncDesTotalDF: Returns data frame with plot coordinates of all ancestors and...
buildAncList: Returns the ancestors of a particular variety (if they...
buildDesList: Returns the descendants of a particular variety (if they...
buildEdgeTotalDF: Build the edges in the genealogy graph.
buildMinusPathDF: Process the genealogy graph
buildPathDF: Build data frame for path representation
buildPlotTotalDF: Build all labels in the graph
buildSpreadTotalDF: Build a data frame where the varieties are spread so they do...
dfToIG: Process the genealogy graph
getAncestors: Returns a list of the ancestors of a particular variety (if...
getBasicStatistics: Determine basic statistics of the graph object
getBranchQual: Descendant branch calculations for quantitative variable
getBranchQuant: Descendant branch calculations for quantitative variable
getChild: Returns the children of a particular variety (if they exist)
getDegree: Determine the degree between two varieties
getDescendants: Returns a list of the descendants of a particular variety (if...
getEdges: Returns edges (vertex names and edge weights) for the full...
getNodes: Returns the nodes for a full genealogy
getParent: Returns the parents of a particular variety (if they exist)
getPath: Determine the path between two varieties
getPathOnly: Determine the path between two varieties
getVariable: Determine the date of a variety
isChild: Determine if a variety is a child of another
isParent: Determine if a variety is a parent of another
nodeToDF: Returns the data frame representation of all ancestors and...
plotAncDes: Returns the image object to show the ancestors and...
plotDegMatrix: Returns the image object to show the heat map of degrees...
plotPath: Construct the graphic object of the path
plotPathOnAll: Plot a path between two vertices over the full genealogy
plotVariableMatrix: Returns the image object to show the heat map of dates...
sbGeneal: Soybean data
statGeneal: Academic statistics data

Functions

Files

inst
inst/doc
inst/doc/ggenealogy.Rnw
inst/doc/ggenealogy.R
inst/doc/ggenealogy.pdf
NAMESPACE
NEWS.md
data
data/sbGeneal.rda
data/statGeneal.rda
R
R/data-statGeneal.R
R/allFunctions.R
R/data-sbGeneal.R
vignettes
vignettes/ggenealogy.Rnw
vignettes/dCox.png
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/getNodes.Rd
man/buildPlotTotalDF.Rd
man/buildDesList.Rd
man/getDegree.Rd
man/buildAncDesTotalDF.Rd
man/plotAncDes.Rd
man/isParent.Rd
man/getAncestors.Rd
man/sbGeneal.Rd
man/buildAncDesCoordDF.Rd
man/statGeneal.Rd
man/getBasicStatistics.Rd
man/plotPath.Rd
man/getChild.Rd
man/nodeToDF.Rd
man/getEdges.Rd
man/buildEdgeTotalDF.Rd
man/plotPathOnAll.Rd
man/buildSpreadTotalDF.Rd
man/getBranchQual.Rd
man/getPath.Rd
man/getPathOnly.Rd
man/buildPathDF.Rd
man/dfToIG.Rd
man/buildAncList.Rd
man/buildMinusPathDF.Rd
man/plotDegMatrix.Rd
man/getVariable.Rd
man/plotVariableMatrix.Rd
man/getBranchQuant.Rd
man/getDescendants.Rd
man/isChild.Rd
man/getParent.Rd
ggenealogy documentation built on May 19, 2017, 12:39 p.m.

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