ggfortify: Data Visualization Tools for Statistical Analysis Results

Unified plotting tools for statistics commonly used, such as GLM, time series, PCA families, clustering and survival analysis. The package offers a single plotting interface for these analysis results and plots in a unified style using 'ggplot2'.

AuthorMasaaki Horikoshi [aut, cre], Yuan Tang [aut, cph]
Date of publication2016-12-02 10:46:22
MaintainerMasaaki Horikoshi <sinhrks@gmail.com>
LicenseGPL-2
Version0.3.0.0
https://github.com/sinhrks/ggfortify

View on CRAN

Man pages

apply_facets: Apply facets to to 'ggplot2::ggplot'

as_tibble.basis: Convert a spline basis to a tibble

autoplot.aareg: Autoplot 'survival::aareg'

autoplot.acf: Autoplot 'stats::acf'. Note to pass 'plot = FALSE' to...

autoplot.basis: Autoplot spline basis instances

autoplot.breakpoints: Autoplot 'strucchange::breakpoints'

autoplot.cpt: Autoplot 'changepoint::cpt'

autoplot.cv.glmnet: Autoplot 'glmnet::cv.glmnet'

autoplot.density: Autoplot 'stats::density'

autoplot.forecast: Autoplot 'forecast::forecast'

autoplot.ggmultiplot: Autoplot 'ggmultiplot' instances. It returns the passed...

autoplot.ggplot: Autoplot 'ggplot' instances. It returns the passed instance...

autoplot.glmnet: Autoplot 'glmnet::glmnet'

autoplot.kmeans: Autoplot cluster instances

autoplot.list: Autoplot list

autoplot.lm: Autoplot 'stats::lm' and 'stats::glm'

autoplot.map: Autoplot 'maps::map'

autoplot.matrix: Plot 'base::matrix'

autoplot.MSM.lm: Autoplot 'MSwM::MSM.lm'

autoplot.pca_common: Autoplot PCA-likes

autoplot.RasterCommon: Autoplot 'raster::raster'

autoplot.SpatialCommon: Autoplot 'maps::map'

autoplot.spec: Autoplot 'stats::spec'

autoplot.stepfun: Plot 'stats::stepfun'

autoplot.survfit: Autoplot 'survival::survfit'

autoplot.ts: Autoplot time-series-like

autoplot.tsmodel: Autoplot time series models (like AR, ARIMA)

autoplot.varprd: Autoplot 'vars::varprd'

cbind_wraps: Wrapper for cbind

check_names: Check data names are equal with expected

confint.acf: Calcurate confidence interval for 'stats::acf'

deprecate.warning: Show deprecate warning

fitted.ar: Calcurate fitted values for 'stats::ar'

fortify.aareg: Convert 'survival::aareg' to 'data.frame'

fortify.acf: Convert 'stats::acf' to 'data.frame'

fortify_base: Convert 'base::table' to 'data.frame'

fortify.basis: Convert spline basis instances to 'data.frame'

fortify.cpt: Convert 'changepoint::cpt' and 'strucchange::breakpoints' to...

fortify.cv.glmnet: Convert 'glmnet::cv.glmnet' to 'data.frame'

fortify.density: Convert 'stats::density' to 'data.frame'

fortify.dist: Convert 'stats::dist' to 'data.frame'

fortify.ets: Convert 'forecast::bats' and 'forecast::ets' to 'data.frame'

fortify.factanal: Convert 'stats::factanal' to 'data.frame'

fortify.forecast: Convert 'forecast::forecast' to 'data.frame'

fortify.glmnet: Convert 'glmnet::glmnet' to 'data.frame'

fortify.kmeans: Convert cluster instances to 'data.frame'

fortify.lfda: Convert 'lfda::lfda' or 'lfda::klfda' or 'lfda::self' to...

fortify.list: Convert list to data.frame

fortify_map: Convert 'maps::map' to 'data.frame'.

fortify.matrix: Convert 'base::matrix' to 'data.frame'

fortify.MSM.lm: Convert 'MSwM::MSM.lm' to 'data.frame'

fortify.prcomp: Convert 'stats::prcomp', 'stats::princomp' to 'data.frame'

fortify.RasterCommon: Convert 'raster' to 'data.frame'

fortify.SpatialCommon: Convert 'sp' instances to 'data.frame'.

fortify.spec: Convert 'stats::spec' to 'data.frame'

fortify.stepfun: Convert 'stats::stepfun' to 'data.frame'

fortify.survfit: Convert 'survival::survfit' to 'data.frame'

fortify.table: Convert 'base::table' to 'data.frame'

fortify.ts: Convert time-series-like to data.frame

fortify.tsmodel: Convert time series models (like AR, ARIMA) to 'data.frame'

fortify.varprd: Convert 'vars::varprd' to 'data.frame'

geom_confint: Connect observations by stairs.

geom_factory: Factory function to control 'ggplot2::geom_xxx' functions

get.dtindex: Convert 'ts' index to 'Date' 'vector'

get.dtindex.continuous: Get 'Date' 'vector' continue to 'ts' index

get_geom_function: Factory function to control 'ggplot2::geom_xxx' functions

get.layout: Calcurate layout matrix for 'ggmultiplot'

ggbiplot: Draw 'biplot' using 'ggplot2'.

ggcpgram: Plots a cumulative periodogram

ggdistribution: Plot distribution

ggfortify: ggfortify

ggfreqplot: Plot seasonal subseries of time series, generalization of...

gglagplot: Plot time series against lagged versions of themselves

ggmultiplot-class: An S4 class to hold multiple 'ggplot2::ggplot' instances

ggtsdiag: Plots time-series diagnostics

grid.draw.ggmultiplot: The implemented grid.draw method for ggmultiplot, in order to...

infer: Infer class name

is_derived_from: Check object is target class, or object is 'data.frame'...

is.univariate: Check if Validates number of 'ts' variates

plot_confint: Attach confidence interval to 'ggplot2::ggplot'

plot_label: Attach label to 'ggplot2::ggplot'

plus-ggmultiplot-ANY-method: Generic add operator for 'ggmultiplot'

post_autoplot: Post process for fortify. Based on 'ggplot2::qplot'

post_fortify: Post process for fortify.

print-ggmultiplot-method: Generic print function for 'ggmultiplot'

rbind_ts: Rbind original and predicted time-series-like instances as...

residuals.ar: Calcurate residuals for 'stats::ar'

show-ggmultiplot-method: Generic show function for 'ggmultiplot'

support_autoplot: Check if passed object is supported by 'ggplot2::autoplot'

unscale: Backtransform 'scale'-ed object

Files in this package

ggfortify
ggfortify/inst
ggfortify/inst/CITATION
ggfortify/inst/doc
ggfortify/inst/doc/intro_Chinese.R
ggfortify/inst/doc/plot_dist.Rmd
ggfortify/inst/doc/plot_lm.R
ggfortify/inst/doc/plot_lm.Rmd
ggfortify/inst/doc/plot_ts.html
ggfortify/inst/doc/plot_map.Rmd
ggfortify/inst/doc/plot_pca.html
ggfortify/inst/doc/plot_surv.Rmd
ggfortify/inst/doc/plot_lm.html
ggfortify/inst/doc/basics.Rmd
ggfortify/inst/doc/plot_pca.Rmd
ggfortify/inst/doc/plot_ts.Rmd
ggfortify/inst/doc/basics.html
ggfortify/inst/doc/plot_pca.R
ggfortify/inst/doc/plot_surv.R
ggfortify/inst/doc/plot_ts.R
ggfortify/inst/doc/basics.R
ggfortify/inst/doc/plot_surv.html
ggfortify/inst/doc/plot_map.html
ggfortify/inst/doc/intro_Chinese.Rmd
ggfortify/inst/doc/plot_map.R
ggfortify/inst/doc/intro_Chinese.html
ggfortify/inst/doc/plot_dist.R
ggfortify/inst/doc/plot_dist.html
ggfortify/tests
ggfortify/tests/testthat
ggfortify/tests/testthat/Rplots.pdf
ggfortify/tests/testthat/test-stats.R
ggfortify/tests/testthat/test-vars.R
ggfortify/tests/testthat/test-surv.R
ggfortify/tests/testthat/test-spatial.R
ggfortify/tests/testthat/test-MSwM.R
ggfortify/tests/testthat/test-backcompat.R
ggfortify/tests/testthat/test-base-infer.R
ggfortify/tests/testthat/test-maps.R
ggfortify/tests/testthat/test-base_ts.R
ggfortify/tests/testthat/test_lint.R
ggfortify/tests/testthat/test-stats-density.R
ggfortify/tests/testthat/test-basis.R
ggfortify/tests/testthat/test-base.R
ggfortify/tests/testthat/test-raster.R
ggfortify/tests/testthat/test-stats-lm.R
ggfortify/tests/testthat/test-forecast.R
ggfortify/tests/testthat/test-tslib.R
ggfortify/tests/testthat/test-glmnet.R
ggfortify/tests/testthat/test-plotlib.R
ggfortify/tests/testthat/test-changepoint.R
ggfortify/tests/testthat/test-cluster.R
ggfortify/tests/testthat/test-util.R
ggfortify/tests/testthat/test-ts.R
ggfortify/tests/test-all.R
ggfortify/NAMESPACE
ggfortify/R
ggfortify/R/fortify_surv.R ggfortify/R/fortify_raster.R ggfortify/R/fortify_cluster.R ggfortify/R/geom.R ggfortify/R/fortify_glmnet.R ggfortify/R/fortify_maps.R ggfortify/R/plotlib.R ggfortify/R/fortify_basis.R ggfortify/R/fortify_spatial.R ggfortify/R/tslib.R ggfortify/R/fortify_stats_lm.R ggfortify/R/base_fortify_ts.R ggfortify/R/base_fortify_list.R ggfortify/R/fortify_stats.R ggfortify/R/fortify_changepoint.R ggfortify/R/ggfortify.R ggfortify/R/util.R ggfortify/R/fortify_MSwM.R ggfortify/R/fortify_stats_density.R ggfortify/R/fortify_vars.R ggfortify/R/fortify_base.R ggfortify/R/fortify_forecast.R
ggfortify/vignettes
ggfortify/vignettes/plot_dist.Rmd
ggfortify/vignettes/plot_lm.Rmd
ggfortify/vignettes/plot_map.Rmd
ggfortify/vignettes/plot_surv.Rmd
ggfortify/vignettes/basics.Rmd
ggfortify/vignettes/plot_pca.Rmd
ggfortify/vignettes/plot_ts.Rmd
ggfortify/vignettes/intro_Chinese.Rmd
ggfortify/MD5
ggfortify/build
ggfortify/build/vignette.rds
ggfortify/DESCRIPTION
ggfortify/man
ggfortify/man/autoplot.map.Rd ggfortify/man/fortify.cv.glmnet.Rd ggfortify/man/fortify.table.Rd ggfortify/man/fortify.SpatialCommon.Rd ggfortify/man/autoplot.SpatialCommon.Rd ggfortify/man/fortify.forecast.Rd ggfortify/man/fortify.stepfun.Rd ggfortify/man/autoplot.RasterCommon.Rd ggfortify/man/fortify.density.Rd ggfortify/man/grid.draw.ggmultiplot.Rd ggfortify/man/fortify.ts.Rd ggfortify/man/get_geom_function.Rd ggfortify/man/fitted.ar.Rd ggfortify/man/get.layout.Rd ggfortify/man/fortify_base.Rd ggfortify/man/fortify.varprd.Rd ggfortify/man/fortify.spec.Rd ggfortify/man/geom_factory.Rd ggfortify/man/fortify.glmnet.Rd ggfortify/man/fortify.aareg.Rd ggfortify/man/gglagplot.Rd ggfortify/man/autoplot.kmeans.Rd ggfortify/man/check_names.Rd ggfortify/man/ggmultiplot-class.Rd ggfortify/man/plot_confint.Rd ggfortify/man/plot_label.Rd ggfortify/man/infer.Rd ggfortify/man/fortify.list.Rd ggfortify/man/get.dtindex.continuous.Rd ggfortify/man/autoplot.pca_common.Rd ggfortify/man/fortify.prcomp.Rd ggfortify/man/ggtsdiag.Rd ggfortify/man/autoplot.ggplot.Rd ggfortify/man/rbind_ts.Rd ggfortify/man/fortify.tsmodel.Rd ggfortify/man/confint.acf.Rd ggfortify/man/geom_confint.Rd ggfortify/man/residuals.ar.Rd ggfortify/man/fortify.factanal.Rd ggfortify/man/is.univariate.Rd ggfortify/man/autoplot.stepfun.Rd ggfortify/man/fortify.dist.Rd ggfortify/man/autoplot.varprd.Rd ggfortify/man/fortify.matrix.Rd ggfortify/man/ggfortify.Rd ggfortify/man/fortify.MSM.lm.Rd ggfortify/man/unscale.Rd ggfortify/man/fortify.ets.Rd ggfortify/man/plus-ggmultiplot-ANY-method.Rd ggfortify/man/post_fortify.Rd ggfortify/man/autoplot.aareg.Rd ggfortify/man/is_derived_from.Rd ggfortify/man/autoplot.density.Rd ggfortify/man/autoplot.tsmodel.Rd ggfortify/man/autoplot.cpt.Rd ggfortify/man/autoplot.survfit.Rd ggfortify/man/autoplot.list.Rd ggfortify/man/fortify.RasterCommon.Rd ggfortify/man/fortify.survfit.Rd ggfortify/man/autoplot.glmnet.Rd ggfortify/man/get.dtindex.Rd ggfortify/man/autoplot.spec.Rd ggfortify/man/fortify.basis.Rd ggfortify/man/fortify.acf.Rd ggfortify/man/autoplot.acf.Rd ggfortify/man/autoplot.basis.Rd ggfortify/man/autoplot.lm.Rd ggfortify/man/autoplot.ggmultiplot.Rd ggfortify/man/print-ggmultiplot-method.Rd ggfortify/man/ggfreqplot.Rd ggfortify/man/autoplot.ts.Rd ggfortify/man/deprecate.warning.Rd ggfortify/man/as_tibble.basis.Rd ggfortify/man/fortify.lfda.Rd ggfortify/man/fortify.cpt.Rd ggfortify/man/cbind_wraps.Rd ggfortify/man/ggbiplot.Rd ggfortify/man/fortify_map.Rd ggfortify/man/ggcpgram.Rd ggfortify/man/autoplot.MSM.lm.Rd ggfortify/man/apply_facets.Rd ggfortify/man/autoplot.forecast.Rd ggfortify/man/fortify.kmeans.Rd ggfortify/man/autoplot.breakpoints.Rd ggfortify/man/support_autoplot.Rd ggfortify/man/show-ggmultiplot-method.Rd ggfortify/man/autoplot.matrix.Rd ggfortify/man/autoplot.cv.glmnet.Rd ggfortify/man/ggdistribution.Rd ggfortify/man/post_autoplot.Rd

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