ggfortify: Data Visualization Tools for Statistical Analysis Results

Unified plotting tools for statistics commonly used, such as GLM, time series, PCA families, clustering and survival analysis. The package offers a single plotting interface for these analysis results and plots in a unified style using 'ggplot2'.

AuthorMasaaki Horikoshi [aut, cre], Yuan Tang [aut, cph]
Date of publication2017-02-16 11:18:07
MaintainerMasaaki Horikoshi <sinhrks@gmail.com>
LicenseGPL-2
Version0.4.1
https://github.com/sinhrks/ggfortify

View on CRAN

Man pages

apply_facets: Apply facets to to 'ggplot2::ggplot'

as_tibble.basis: Convert a spline basis to a tibble

autoplot.aareg: Autoplot 'survival::aareg'

autoplot.acf: Autoplot 'stats::acf'. Note to pass 'plot = FALSE' to...

autoplot.basis: Autoplot spline basis instances

autoplot.breakpoints: Autoplot 'strucchange::breakpoints'

autoplot.cpt: Autoplot 'changepoint::cpt'

autoplot.cv.glmnet: Autoplot 'glmnet::cv.glmnet'

autoplot.density: Autoplot 'stats::density'

autoplot.forecast: Autoplot 'forecast::forecast'

autoplot.ggmultiplot: Autoplot 'ggmultiplot' instances. It returns the passed...

autoplot.ggplot: Autoplot 'ggplot' instances. It returns the passed instance...

autoplot.glmnet: Autoplot 'glmnet::glmnet'

autoplot.kmeans: Autoplot cluster instances

autoplot.list: Autoplot list

autoplot.lm: Autoplot 'stats::lm' and 'stats::glm'

autoplot.map: Autoplot 'maps::map'

autoplot.matrix: Plot 'base::matrix'

autoplot.MSM.lm: Autoplot 'MSwM::MSM.lm'

autoplot.pca_common: Autoplot PCA-likes

autoplot.performance: Autoplot 'ROCR::performance'

autoplot.RasterCommon: Autoplot 'raster::raster'

autoplot.SpatialCommon: Autoplot 'maps::map'

autoplot.spec: Autoplot 'stats::spec'

autoplot.stepfun: Plot 'stats::stepfun'

autoplot.survfit: Autoplot 'survival::survfit'

autoplot.ts: Autoplot time-series-like

autoplot.tsmodel: Autoplot time series models (like AR, ARIMA)

autoplot.varprd: Autoplot 'vars::varprd'

cbind_wraps: Wrapper for cbind

check_names: Check data names are equal with expected

confint.acf: Calcurate confidence interval for 'stats::acf'

deprecate.warning: Show deprecate warning

fitted.ar: Calcurate fitted values for 'stats::ar'

flatten: Flatten dataframe contains matrix

fortify.aareg: Convert 'survival::aareg' to 'data.frame'

fortify.acf: Convert 'stats::acf' to 'data.frame'

fortify_base: Convert 'base::table' to 'data.frame'

fortify.basis: Convert spline basis instances to 'data.frame'

fortify.cpt: Convert 'changepoint::cpt' and 'strucchange::breakpoints' to...

fortify.cv.glmnet: Convert 'glmnet::cv.glmnet' to 'data.frame'

fortify.density: Convert 'stats::density' to 'data.frame'

fortify.dist: Convert 'stats::dist' to 'data.frame'

fortify.ets: Convert 'forecast::bats' and 'forecast::ets' to 'data.frame'

fortify.factanal: Convert 'stats::factanal' to 'data.frame'

fortify.forecast: Convert 'forecast::forecast' to 'data.frame'

fortify.glmnet: Convert 'glmnet::glmnet' to 'data.frame'

fortify.kmeans: Convert cluster instances to 'data.frame'

fortify.lfda: Convert 'lfda::lfda' or 'lfda::klfda' or 'lfda::self' to...

fortify.list: Convert list to data.frame

fortify_map: Convert 'maps::map' to 'data.frame'.

fortify.matrix: Convert 'base::matrix' to 'data.frame'

fortify.MSM.lm: Convert 'MSwM::MSM.lm' to 'data.frame'

fortify.performance: Convert 'ROCR::performance' objects to 'data.frame'

fortify.prcomp: Convert 'stats::prcomp', 'stats::princomp' to 'data.frame'

fortify.RasterCommon: Convert 'raster' to 'data.frame'

fortify.SpatialCommon: Convert 'sp' instances to 'data.frame'.

fortify.spec: Convert 'stats::spec' to 'data.frame'

fortify.stepfun: Convert 'stats::stepfun' to 'data.frame'

fortify.survfit: Convert 'survival::survfit' to 'data.frame'

fortify.table: Convert 'base::table' to 'data.frame'

fortify.ts: Convert time-series-like to data.frame

fortify.tsmodel: Convert time series models (like AR, ARIMA) to 'data.frame'

fortify.varprd: Convert 'vars::varprd' to 'data.frame'

geom_confint: Connect observations by stairs.

geom_factory: Factory function to control 'ggplot2::geom_xxx' functions

get.dtindex: Convert 'ts' index to 'Date' 'vector'

get.dtindex.continuous: Get 'Date' 'vector' continue to 'ts' index

get_geom_function: Factory function to control 'ggplot2::geom_xxx' functions

get.layout: Calcurate layout matrix for 'ggmultiplot'

ggbiplot: Draw 'biplot' using 'ggplot2'.

ggcpgram: Plots a cumulative periodogram

ggdistribution: Plot distribution

ggfortify: ggfortify

ggfreqplot: Plot seasonal subseries of time series, generalization of...

gglagplot: Plot time series against lagged versions of themselves

ggmultiplot-class: An S4 class to hold multiple 'ggplot2::ggplot' instances

ggtsdiag: Plots time-series diagnostics

grid.draw.ggmultiplot: The implemented grid.draw method for ggmultiplot, in order to...

infer: Infer class name

is_derived_from: Check object is target class, or object is 'data.frame'...

is.univariate: Check if Validates number of 'ts' variates

plot_confint: Attach confidence interval to 'ggplot2::ggplot'

plot_label: Attach label to 'ggplot2::ggplot'

plus-ggmultiplot-ANY-method: Generic add operator for 'ggmultiplot'

post_autoplot: Post process for fortify. Based on 'ggplot2::qplot'

post_fortify: Post process for fortify.

print-ggmultiplot-method: Generic print function for 'ggmultiplot'

rbind_ts: Rbind original and predicted time-series-like instances as...

residuals.ar: Calcurate residuals for 'stats::ar'

show-ggmultiplot-method: Generic show function for 'ggmultiplot'

support_autoplot: Check if passed object is supported by 'ggplot2::autoplot'

unscale: Backtransform 'scale'-ed object

Functions

apply_facets Man page
as_tibble.basis Man page
autoplot.aareg Man page
autoplot.acf Man page
autoplot.ar Man page
autoplot.basis Man page
autoplot.breakpoints Man page
autoplot.breakpointsfull Man page
autoplot.cpt Man page
autoplot.cv.glmnet Man page
autoplot.decomposed.ts Man page
autoplot.density Man page
autoplot.factanal Man page
autoplot.fGARCH Man page
autoplot.forecast Man page
autoplot.fracdiff Man page
autoplot.ggmultiplot Man page
autoplot.ggplot Man page
autoplot.glmnet Man page
autoplot.HoltWinters Man page
autoplot.irts Man page
autoplot.kmeans Man page
autoplot.list Man page
autoplot.lm Man page
autoplot.map Man page
autoplot.matrix Man page
autoplot.MSM.lm Man page
autoplot.nnetar Man page
autoplot.pca_common Man page
autoplot.performance Man page
autoplot.prcomp Man page
autoplot.princomp Man page
autoplot.RasterCommon Man page
autoplot.SpatialCommon Man page
autoplot.spec Man page
autoplot.stepfun Man page
autoplot.stl Man page
autoplot.survfit Man page
autoplot.survfit.cox Man page
autoplot.timeSeries Man page
autoplot.ts Man page
autoplot.tsmodel Man page
autoplot.varprd Man page
autoplot.xts Man page
cbind_wraps Man page
check_names Man page
confint.acf Man page
deprecate.warning Man page
fitted.ar Man page
flatten Man page
fortify.aareg Man page
fortify.acf Man page
fortify.ar Man page
fortify.Arima Man page
fortify_base Man page
fortify.basis Man page
fortify.breakpoints Man page
fortify.breakpointsfull Man page
fortify.cpt Man page
fortify.cv.glmnet Man page
fortify.density Man page
fortify.dist Man page
fortify.ets Man page
fortify.factanal Man page
fortify.fGARCH Man page
fortify.forecast Man page
fortify.fracdiff Man page
fortify.glmnet Man page
fortify.HoltWinters Man page
fortify.kmeans Man page
fortify.lfda Man page
fortify.list Man page
fortify_map Man page
fortify.matrix Man page
fortify.MSM.lm Man page
fortify.nnetar Man page
fortify.performance Man page
fortify.prcomp Man page
fortify.princomp Man page
fortify.RasterCommon Man page
fortify.SpatialCommon Man page
fortify.spec Man page
fortify.stepfun Man page
fortify.survfit Man page
fortify.survfit.cox Man page
fortify.table Man page
fortify.ts Man page
fortify.tsmodel Man page
fortify.varprd Man page
geom_confint Man page
geom_factory Man page
get.dtindex Man page
get.dtindex.continuous Man page
get_geom_function Man page
get.layout Man page
ggbiplot Man page
ggcpgram Man page
ggdistribution Man page
ggfortify Man page
ggfortify-package Man page
ggfreqplot Man page
gglagplot Man page
+,ggmultiplot,ANY-method Man page
ggmultiplot-class Man page
[<-,ggmultiplot-method Man page
[,ggmultiplot-method Man page
[[<-,ggmultiplot-method Man page
[[,ggmultiplot-method Man page
ggtsdiag Man page
grid.draw.ggmultiplot Man page
infer Man page
is_derived_from Man page
is.univariate Man page
length,ggmultiplot-method Man page
plot_confint Man page
plot_label Man page
post_autoplot Man page
post_fortify Man page
print,ggmultiplot-method Man page
rbind_ts Man page
residuals.ar Man page
show,ggmultiplot-method Man page
support_autoplot Man page
unscale Man page

Files

ggfortify
ggfortify/inst
ggfortify/inst/CITATION
ggfortify/inst/doc
ggfortify/inst/doc/intro_Chinese.R
ggfortify/inst/doc/plot_dist.Rmd
ggfortify/inst/doc/plot_lm.R
ggfortify/inst/doc/plot_lm.Rmd
ggfortify/inst/doc/plot_ts.html
ggfortify/inst/doc/plot_map.Rmd
ggfortify/inst/doc/plot_pca.html
ggfortify/inst/doc/plot_surv.Rmd
ggfortify/inst/doc/plot_lm.html
ggfortify/inst/doc/basics.Rmd
ggfortify/inst/doc/plot_pca.Rmd
ggfortify/inst/doc/plot_ts.Rmd
ggfortify/inst/doc/basics.html
ggfortify/inst/doc/plot_pca.R
ggfortify/inst/doc/plot_surv.R
ggfortify/inst/doc/plot_ts.R
ggfortify/inst/doc/basics.R
ggfortify/inst/doc/plot_surv.html
ggfortify/inst/doc/plot_map.html
ggfortify/inst/doc/intro_Chinese.Rmd
ggfortify/inst/doc/plot_map.R
ggfortify/inst/doc/intro_Chinese.html
ggfortify/inst/doc/plot_dist.R
ggfortify/inst/doc/plot_dist.html
ggfortify/tests
ggfortify/tests/testthat
ggfortify/tests/testthat/test-stats.R
ggfortify/tests/testthat/test-vars.R
ggfortify/tests/testthat/test-surv.R
ggfortify/tests/testthat/test-spatial.R
ggfortify/tests/testthat/test-MSwM.R
ggfortify/tests/testthat/test-backcompat.R
ggfortify/tests/testthat/test-base-infer.R
ggfortify/tests/testthat/test-performance.R
ggfortify/tests/testthat/test-maps.R
ggfortify/tests/testthat/test-base_ts.R
ggfortify/tests/testthat/test_lint.R
ggfortify/tests/testthat/test-stats-density.R
ggfortify/tests/testthat/test-basis.R
ggfortify/tests/testthat/test-base.R
ggfortify/tests/testthat/test-raster.R
ggfortify/tests/testthat/test-stats-lm.R
ggfortify/tests/testthat/test-forecast.R
ggfortify/tests/testthat/test-tslib.R
ggfortify/tests/testthat/test-glmnet.R
ggfortify/tests/testthat/test-plotlib.R
ggfortify/tests/testthat/test-changepoint.R
ggfortify/tests/testthat/test-cluster.R
ggfortify/tests/testthat/test-util.R
ggfortify/tests/testthat/test-ts.R
ggfortify/tests/test-all.R
ggfortify/NAMESPACE
ggfortify/NEWS
ggfortify/R
ggfortify/R/fortify_surv.R ggfortify/R/fortify_raster.R ggfortify/R/fortify_cluster.R ggfortify/R/geom.R ggfortify/R/fortify_glmnet.R ggfortify/R/fortify_maps.R ggfortify/R/plotlib.R ggfortify/R/fortify_basis.R ggfortify/R/fortify_spatial.R ggfortify/R/tslib.R ggfortify/R/fortify_stats_lm.R ggfortify/R/base_fortify_ts.R ggfortify/R/base_fortify_list.R ggfortify/R/fortify_stats.R ggfortify/R/fortify_changepoint.R ggfortify/R/fortify_performance.R ggfortify/R/ggfortify.R ggfortify/R/util.R ggfortify/R/fortify_MSwM.R ggfortify/R/fortify_stats_density.R ggfortify/R/fortify_vars.R ggfortify/R/fortify_base.R ggfortify/R/fortify_forecast.R
ggfortify/vignettes
ggfortify/vignettes/plot_dist.Rmd
ggfortify/vignettes/plot_lm.Rmd
ggfortify/vignettes/plot_map.Rmd
ggfortify/vignettes/plot_surv.Rmd
ggfortify/vignettes/basics.Rmd
ggfortify/vignettes/plot_pca.Rmd
ggfortify/vignettes/plot_ts.Rmd
ggfortify/vignettes/intro_Chinese.Rmd
ggfortify/MD5
ggfortify/build
ggfortify/build/vignette.rds
ggfortify/DESCRIPTION
ggfortify/man
ggfortify/man/autoplot.map.Rd ggfortify/man/fortify.cv.glmnet.Rd ggfortify/man/fortify.table.Rd ggfortify/man/fortify.SpatialCommon.Rd ggfortify/man/autoplot.SpatialCommon.Rd ggfortify/man/fortify.forecast.Rd ggfortify/man/fortify.stepfun.Rd ggfortify/man/autoplot.RasterCommon.Rd ggfortify/man/fortify.density.Rd ggfortify/man/grid.draw.ggmultiplot.Rd ggfortify/man/fortify.ts.Rd ggfortify/man/get_geom_function.Rd ggfortify/man/fitted.ar.Rd ggfortify/man/get.layout.Rd ggfortify/man/fortify_base.Rd ggfortify/man/fortify.varprd.Rd ggfortify/man/fortify.spec.Rd ggfortify/man/geom_factory.Rd ggfortify/man/fortify.glmnet.Rd ggfortify/man/fortify.aareg.Rd ggfortify/man/gglagplot.Rd ggfortify/man/autoplot.kmeans.Rd ggfortify/man/check_names.Rd ggfortify/man/ggmultiplot-class.Rd ggfortify/man/plot_confint.Rd ggfortify/man/plot_label.Rd ggfortify/man/infer.Rd ggfortify/man/fortify.list.Rd ggfortify/man/get.dtindex.continuous.Rd ggfortify/man/autoplot.pca_common.Rd ggfortify/man/fortify.prcomp.Rd ggfortify/man/ggtsdiag.Rd ggfortify/man/autoplot.ggplot.Rd ggfortify/man/rbind_ts.Rd ggfortify/man/fortify.tsmodel.Rd ggfortify/man/flatten.Rd ggfortify/man/confint.acf.Rd ggfortify/man/geom_confint.Rd ggfortify/man/residuals.ar.Rd ggfortify/man/fortify.factanal.Rd ggfortify/man/is.univariate.Rd ggfortify/man/autoplot.stepfun.Rd ggfortify/man/fortify.dist.Rd ggfortify/man/autoplot.varprd.Rd ggfortify/man/fortify.matrix.Rd ggfortify/man/ggfortify.Rd ggfortify/man/fortify.MSM.lm.Rd ggfortify/man/unscale.Rd ggfortify/man/fortify.ets.Rd ggfortify/man/plus-ggmultiplot-ANY-method.Rd ggfortify/man/post_fortify.Rd ggfortify/man/autoplot.aareg.Rd ggfortify/man/is_derived_from.Rd ggfortify/man/autoplot.density.Rd ggfortify/man/autoplot.tsmodel.Rd ggfortify/man/autoplot.cpt.Rd ggfortify/man/autoplot.performance.Rd ggfortify/man/autoplot.survfit.Rd ggfortify/man/autoplot.list.Rd ggfortify/man/fortify.RasterCommon.Rd ggfortify/man/fortify.survfit.Rd ggfortify/man/autoplot.glmnet.Rd ggfortify/man/get.dtindex.Rd ggfortify/man/autoplot.spec.Rd ggfortify/man/fortify.basis.Rd ggfortify/man/fortify.acf.Rd ggfortify/man/autoplot.acf.Rd ggfortify/man/autoplot.basis.Rd ggfortify/man/autoplot.lm.Rd ggfortify/man/autoplot.ggmultiplot.Rd ggfortify/man/fortify.performance.Rd ggfortify/man/print-ggmultiplot-method.Rd ggfortify/man/ggfreqplot.Rd ggfortify/man/autoplot.ts.Rd ggfortify/man/deprecate.warning.Rd ggfortify/man/as_tibble.basis.Rd ggfortify/man/fortify.lfda.Rd ggfortify/man/fortify.cpt.Rd ggfortify/man/cbind_wraps.Rd ggfortify/man/ggbiplot.Rd ggfortify/man/fortify_map.Rd ggfortify/man/ggcpgram.Rd ggfortify/man/autoplot.MSM.lm.Rd ggfortify/man/apply_facets.Rd ggfortify/man/autoplot.forecast.Rd ggfortify/man/fortify.kmeans.Rd ggfortify/man/autoplot.breakpoints.Rd ggfortify/man/support_autoplot.Rd ggfortify/man/show-ggmultiplot-method.Rd ggfortify/man/autoplot.matrix.Rd ggfortify/man/autoplot.cv.glmnet.Rd ggfortify/man/ggdistribution.Rd ggfortify/man/post_autoplot.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.