ggfortify: Data Visualization Tools for Statistical Analysis Results
Version 0.4.1

Unified plotting tools for statistics commonly used, such as GLM, time series, PCA families, clustering and survival analysis. The package offers a single plotting interface for these analysis results and plots in a unified style using 'ggplot2'.

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AuthorMasaaki Horikoshi [aut, cre], Yuan Tang [aut, cph]
Date of publication2017-02-16 11:18:07
MaintainerMasaaki Horikoshi <sinhrks@gmail.com>
LicenseGPL-2
Version0.4.1
URL https://github.com/sinhrks/ggfortify
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ggfortify")

Man pages

apply_facets: Apply facets to to 'ggplot2::ggplot'
as_tibble.basis: Convert a spline basis to a tibble
autoplot.aareg: Autoplot 'survival::aareg'
autoplot.acf: Autoplot 'stats::acf'. Note to pass 'plot = FALSE' to...
autoplot.basis: Autoplot spline basis instances
autoplot.breakpoints: Autoplot 'strucchange::breakpoints'
autoplot.cpt: Autoplot 'changepoint::cpt'
autoplot.cv.glmnet: Autoplot 'glmnet::cv.glmnet'
autoplot.density: Autoplot 'stats::density'
autoplot.forecast: Autoplot 'forecast::forecast'
autoplot.ggmultiplot: Autoplot 'ggmultiplot' instances. It returns the passed...
autoplot.ggplot: Autoplot 'ggplot' instances. It returns the passed instance...
autoplot.glmnet: Autoplot 'glmnet::glmnet'
autoplot.kmeans: Autoplot cluster instances
autoplot.list: Autoplot list
autoplot.lm: Autoplot 'stats::lm' and 'stats::glm'
autoplot.map: Autoplot 'maps::map'
autoplot.matrix: Plot 'base::matrix'
autoplot.MSM.lm: Autoplot 'MSwM::MSM.lm'
autoplot.pca_common: Autoplot PCA-likes
autoplot.performance: Autoplot 'ROCR::performance'
autoplot.RasterCommon: Autoplot 'raster::raster'
autoplot.SpatialCommon: Autoplot 'maps::map'
autoplot.spec: Autoplot 'stats::spec'
autoplot.stepfun: Plot 'stats::stepfun'
autoplot.survfit: Autoplot 'survival::survfit'
autoplot.ts: Autoplot time-series-like
autoplot.tsmodel: Autoplot time series models (like AR, ARIMA)
autoplot.varprd: Autoplot 'vars::varprd'
cbind_wraps: Wrapper for cbind
check_names: Check data names are equal with expected
confint.acf: Calcurate confidence interval for 'stats::acf'
deprecate.warning: Show deprecate warning
fitted.ar: Calcurate fitted values for 'stats::ar'
flatten: Flatten dataframe contains matrix
fortify.aareg: Convert 'survival::aareg' to 'data.frame'
fortify.acf: Convert 'stats::acf' to 'data.frame'
fortify_base: Convert 'base::table' to 'data.frame'
fortify.basis: Convert spline basis instances to 'data.frame'
fortify.cpt: Convert 'changepoint::cpt' and 'strucchange::breakpoints' to...
fortify.cv.glmnet: Convert 'glmnet::cv.glmnet' to 'data.frame'
fortify.density: Convert 'stats::density' to 'data.frame'
fortify.dist: Convert 'stats::dist' to 'data.frame'
fortify.ets: Convert 'forecast::bats' and 'forecast::ets' to 'data.frame'
fortify.factanal: Convert 'stats::factanal' to 'data.frame'
fortify.forecast: Convert 'forecast::forecast' to 'data.frame'
fortify.glmnet: Convert 'glmnet::glmnet' to 'data.frame'
fortify.kmeans: Convert cluster instances to 'data.frame'
fortify.lfda: Convert 'lfda::lfda' or 'lfda::klfda' or 'lfda::self' to...
fortify.list: Convert list to data.frame
fortify_map: Convert 'maps::map' to 'data.frame'.
fortify.matrix: Convert 'base::matrix' to 'data.frame'
fortify.MSM.lm: Convert 'MSwM::MSM.lm' to 'data.frame'
fortify.performance: Convert 'ROCR::performance' objects to 'data.frame'
fortify.prcomp: Convert 'stats::prcomp', 'stats::princomp' to 'data.frame'
fortify.RasterCommon: Convert 'raster' to 'data.frame'
fortify.SpatialCommon: Convert 'sp' instances to 'data.frame'.
fortify.spec: Convert 'stats::spec' to 'data.frame'
fortify.stepfun: Convert 'stats::stepfun' to 'data.frame'
fortify.survfit: Convert 'survival::survfit' to 'data.frame'
fortify.table: Convert 'base::table' to 'data.frame'
fortify.ts: Convert time-series-like to data.frame
fortify.tsmodel: Convert time series models (like AR, ARIMA) to 'data.frame'
fortify.varprd: Convert 'vars::varprd' to 'data.frame'
geom_confint: Connect observations by stairs.
geom_factory: Factory function to control 'ggplot2::geom_xxx' functions
get.dtindex: Convert 'ts' index to 'Date' 'vector'
get.dtindex.continuous: Get 'Date' 'vector' continue to 'ts' index
get_geom_function: Factory function to control 'ggplot2::geom_xxx' functions
get.layout: Calcurate layout matrix for 'ggmultiplot'
ggbiplot: Draw 'biplot' using 'ggplot2'.
ggcpgram: Plots a cumulative periodogram
ggdistribution: Plot distribution
ggfortify: ggfortify
ggfreqplot: Plot seasonal subseries of time series, generalization of...
gglagplot: Plot time series against lagged versions of themselves
ggmultiplot-class: An S4 class to hold multiple 'ggplot2::ggplot' instances
ggtsdiag: Plots time-series diagnostics
grid.draw.ggmultiplot: The implemented grid.draw method for ggmultiplot, in order to...
infer: Infer class name
is_derived_from: Check object is target class, or object is 'data.frame'...
is.univariate: Check if Validates number of 'ts' variates
plot_confint: Attach confidence interval to 'ggplot2::ggplot'
plot_label: Attach label to 'ggplot2::ggplot'
plus-ggmultiplot-ANY-method: Generic add operator for 'ggmultiplot'
post_autoplot: Post process for fortify. Based on 'ggplot2::qplot'
post_fortify: Post process for fortify.
print-ggmultiplot-method: Generic print function for 'ggmultiplot'
rbind_ts: Rbind original and predicted time-series-like instances as...
residuals.ar: Calcurate residuals for 'stats::ar'
show-ggmultiplot-method: Generic show function for 'ggmultiplot'
support_autoplot: Check if passed object is supported by 'ggplot2::autoplot'
unscale: Backtransform 'scale'-ed object

Functions

+,ggmultiplot,ANY-method Man page
[,ggmultiplot-method Man page
[<-,ggmultiplot-method Man page
[[,ggmultiplot-method Man page
[[<-,ggmultiplot-method Man page
apply_facets Man page Source code
as_tibble.basis Man page Source code
autoplot.HoltWinters Man page
autoplot.MSM.lm Man page Source code
autoplot.RasterCommon Man page Source code
autoplot.SpatialCommon Man page Source code
autoplot.aareg Man page Source code
autoplot.acf Man page Source code
autoplot.ar Man page
autoplot.basis Man page Source code
autoplot.breakpoints Man page Source code
autoplot.breakpointsfull Man page
autoplot.cpt Man page Source code
autoplot.cv.glmnet Man page Source code
autoplot.decomposed.ts Man page
autoplot.density Man page Source code
autoplot.fGARCH Man page
autoplot.factanal Man page
autoplot.forecast Man page Source code
autoplot.fracdiff Man page
autoplot.ggmultiplot Man page Source code
autoplot.ggplot Man page Source code
autoplot.glmnet Man page Source code
autoplot.irts Man page
autoplot.kmeans Man page Source code
autoplot.list Man page Source code
autoplot.lm Man page Source code
autoplot.map Man page Source code
autoplot.matrix Man page Source code
autoplot.nnetar Man page
autoplot.pca_common Man page Source code
autoplot.performance Man page Source code
autoplot.prcomp Man page
autoplot.princomp Man page
autoplot.spec Man page Source code
autoplot.stepfun Man page Source code
autoplot.stl Man page
autoplot.survfit Man page Source code
autoplot.survfit.cox Man page
autoplot.timeSeries Man page
autoplot.ts Man page Source code
autoplot.tsmodel Man page Source code
autoplot.varprd Man page Source code
autoplot.xts Man page
cbind_wraps Man page Source code
check_names Man page Source code
confint.acf Man page Source code
deprecate.warning Man page Source code
fitted.ar Man page Source code
flatten Man page Source code
fortify.Arima Man page
fortify.HoltWinters Man page
fortify.MSM.lm Man page Source code
fortify.RasterCommon Man page Source code
fortify.SpatialCommon Man page Source code
fortify.aareg Man page Source code
fortify.acf Man page Source code
fortify.ar Man page
fortify.basis Man page Source code
fortify.breakpoints Man page
fortify.breakpointsfull Man page
fortify.cpt Man page Source code
fortify.cv.glmnet Man page Source code
fortify.density Man page Source code
fortify.dist Man page Source code
fortify.ets Man page Source code
fortify.fGARCH Man page
fortify.factanal Man page Source code
fortify.forecast Man page Source code
fortify.fracdiff Man page
fortify.glmnet Man page Source code
fortify.kmeans Man page Source code
fortify.lfda Man page Source code
fortify.list Man page Source code
fortify.matrix Man page Source code
fortify.nnetar Man page
fortify.performance Man page Source code
fortify.prcomp Man page Source code
fortify.princomp Man page
fortify.spec Man page Source code
fortify.stepfun Man page Source code
fortify.survfit Man page Source code
fortify.survfit.cox Man page
fortify.table Man page Source code
fortify.ts Man page Source code
fortify.tsmodel Man page Source code
fortify.varprd Man page Source code
fortify_base Man page Source code
fortify_map Man page Source code
geom_confint Man page Source code
geom_factory Man page Source code
get.dtindex Man page Source code
get.dtindex.continuous Man page Source code
get.layout Man page Source code
get_geom_function Man page Source code
ggbiplot Man page Source code
ggcpgram Man page Source code
ggdistribution Man page Source code
ggfortify Man page
ggfortify-package Man page
ggfreqplot Man page Source code
gglagplot Man page Source code
ggmultiplot-class Man page
ggtsdiag Man page Source code
grid.draw.ggmultiplot Man page Source code
infer Man page Source code
is.univariate Man page Source code
is_derived_from Man page Source code
length,ggmultiplot-method Man page
plot_confint Man page Source code
plot_label Man page Source code
post_autoplot Man page Source code
post_fortify Man page Source code
print,ggmultiplot-method Man page
rbind_ts Man page Source code
residuals.ar Man page Source code
show,ggmultiplot-method Man page
support_autoplot Man page Source code
unscale Man page Source code

Files

inst
inst/CITATION
inst/doc
inst/doc/intro_Chinese.R
inst/doc/plot_dist.Rmd
inst/doc/plot_lm.R
inst/doc/plot_lm.Rmd
inst/doc/plot_ts.html
inst/doc/plot_map.Rmd
inst/doc/plot_pca.html
inst/doc/plot_surv.Rmd
inst/doc/plot_lm.html
inst/doc/basics.Rmd
inst/doc/plot_pca.Rmd
inst/doc/plot_ts.Rmd
inst/doc/basics.html
inst/doc/plot_pca.R
inst/doc/plot_surv.R
inst/doc/plot_ts.R
inst/doc/basics.R
inst/doc/plot_surv.html
inst/doc/plot_map.html
inst/doc/intro_Chinese.Rmd
inst/doc/plot_map.R
inst/doc/intro_Chinese.html
inst/doc/plot_dist.R
inst/doc/plot_dist.html
tests
tests/testthat
tests/testthat/test-stats.R
tests/testthat/test-vars.R
tests/testthat/test-surv.R
tests/testthat/test-spatial.R
tests/testthat/test-MSwM.R
tests/testthat/test-backcompat.R
tests/testthat/test-base-infer.R
tests/testthat/test-performance.R
tests/testthat/test-maps.R
tests/testthat/test-base_ts.R
tests/testthat/test_lint.R
tests/testthat/test-stats-density.R
tests/testthat/test-basis.R
tests/testthat/test-base.R
tests/testthat/test-raster.R
tests/testthat/test-stats-lm.R
tests/testthat/test-forecast.R
tests/testthat/test-tslib.R
tests/testthat/test-glmnet.R
tests/testthat/test-plotlib.R
tests/testthat/test-changepoint.R
tests/testthat/test-cluster.R
tests/testthat/test-util.R
tests/testthat/test-ts.R
tests/test-all.R
NAMESPACE
NEWS
R
R/fortify_surv.R
R/fortify_raster.R
R/fortify_cluster.R
R/geom.R
R/fortify_glmnet.R
R/fortify_maps.R
R/plotlib.R
R/fortify_basis.R
R/fortify_spatial.R
R/tslib.R
R/fortify_stats_lm.R
R/base_fortify_ts.R
R/base_fortify_list.R
R/fortify_stats.R
R/fortify_changepoint.R
R/fortify_performance.R
R/ggfortify.R
R/util.R
R/fortify_MSwM.R
R/fortify_stats_density.R
R/fortify_vars.R
R/fortify_base.R
R/fortify_forecast.R
vignettes
vignettes/plot_dist.Rmd
vignettes/plot_lm.Rmd
vignettes/plot_map.Rmd
vignettes/plot_surv.Rmd
vignettes/basics.Rmd
vignettes/plot_pca.Rmd
vignettes/plot_ts.Rmd
vignettes/intro_Chinese.Rmd
MD5
build
build/vignette.rds
DESCRIPTION
man
man/autoplot.map.Rd
man/fortify.cv.glmnet.Rd
man/fortify.table.Rd
man/fortify.SpatialCommon.Rd
man/autoplot.SpatialCommon.Rd
man/fortify.forecast.Rd
man/fortify.stepfun.Rd
man/autoplot.RasterCommon.Rd
man/fortify.density.Rd
man/grid.draw.ggmultiplot.Rd
man/fortify.ts.Rd
man/get_geom_function.Rd
man/fitted.ar.Rd
man/get.layout.Rd
man/fortify_base.Rd
man/fortify.varprd.Rd
man/fortify.spec.Rd
man/geom_factory.Rd
man/fortify.glmnet.Rd
man/fortify.aareg.Rd
man/gglagplot.Rd
man/autoplot.kmeans.Rd
man/check_names.Rd
man/ggmultiplot-class.Rd
man/plot_confint.Rd
man/plot_label.Rd
man/infer.Rd
man/fortify.list.Rd
man/get.dtindex.continuous.Rd
man/autoplot.pca_common.Rd
man/fortify.prcomp.Rd
man/ggtsdiag.Rd
man/autoplot.ggplot.Rd
man/rbind_ts.Rd
man/fortify.tsmodel.Rd
man/flatten.Rd
man/confint.acf.Rd
man/geom_confint.Rd
man/residuals.ar.Rd
man/fortify.factanal.Rd
man/is.univariate.Rd
man/autoplot.stepfun.Rd
man/fortify.dist.Rd
man/autoplot.varprd.Rd
man/fortify.matrix.Rd
man/ggfortify.Rd
man/fortify.MSM.lm.Rd
man/unscale.Rd
man/fortify.ets.Rd
man/plus-ggmultiplot-ANY-method.Rd
man/post_fortify.Rd
man/autoplot.aareg.Rd
man/is_derived_from.Rd
man/autoplot.density.Rd
man/autoplot.tsmodel.Rd
man/autoplot.cpt.Rd
man/autoplot.performance.Rd
man/autoplot.survfit.Rd
man/autoplot.list.Rd
man/fortify.RasterCommon.Rd
man/fortify.survfit.Rd
man/autoplot.glmnet.Rd
man/get.dtindex.Rd
man/autoplot.spec.Rd
man/fortify.basis.Rd
man/fortify.acf.Rd
man/autoplot.acf.Rd
man/autoplot.basis.Rd
man/autoplot.lm.Rd
man/autoplot.ggmultiplot.Rd
man/fortify.performance.Rd
man/print-ggmultiplot-method.Rd
man/ggfreqplot.Rd
man/autoplot.ts.Rd
man/deprecate.warning.Rd
man/as_tibble.basis.Rd
man/fortify.lfda.Rd
man/fortify.cpt.Rd
man/cbind_wraps.Rd
man/ggbiplot.Rd
man/fortify_map.Rd
man/ggcpgram.Rd
man/autoplot.MSM.lm.Rd
man/apply_facets.Rd
man/autoplot.forecast.Rd
man/fortify.kmeans.Rd
man/autoplot.breakpoints.Rd
man/support_autoplot.Rd
man/show-ggmultiplot-method.Rd
man/autoplot.matrix.Rd
man/autoplot.cv.glmnet.Rd
man/ggdistribution.Rd
man/post_autoplot.Rd
ggfortify documentation built on May 19, 2017, 10:10 p.m.