ggfortify: Data Visualization Tools for Statistical Analysis Results

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Unified plotting tools for statistics commonly used, such as GLM, time series, PCA families, clustering and survival analysis. The package offers a single plotting interface for these analysis results and plots in a unified style using 'ggplot2'.

Author
Masaaki Horikoshi [aut, cre], Yuan Tang [aut, cph]
Date of publication
2016-12-02 10:46:22
Maintainer
Masaaki Horikoshi <sinhrks@gmail.com>
License
GPL-2
Version
0.3.0.0
URLs

View on CRAN

Man pages

apply_facets
Apply facets to to 'ggplot2::ggplot'
as_tibble.basis
Convert a spline basis to a tibble
autoplot.aareg
Autoplot 'survival::aareg'
autoplot.acf
Autoplot 'stats::acf'. Note to pass 'plot = FALSE' to...
autoplot.basis
Autoplot spline basis instances
autoplot.breakpoints
Autoplot 'strucchange::breakpoints'
autoplot.cpt
Autoplot 'changepoint::cpt'
autoplot.cv.glmnet
Autoplot 'glmnet::cv.glmnet'
autoplot.density
Autoplot 'stats::density'
autoplot.forecast
Autoplot 'forecast::forecast'
autoplot.ggmultiplot
Autoplot 'ggmultiplot' instances. It returns the passed...
autoplot.ggplot
Autoplot 'ggplot' instances. It returns the passed instance...
autoplot.glmnet
Autoplot 'glmnet::glmnet'
autoplot.kmeans
Autoplot cluster instances
autoplot.list
Autoplot list
autoplot.lm
Autoplot 'stats::lm' and 'stats::glm'
autoplot.map
Autoplot 'maps::map'
autoplot.matrix
Plot 'base::matrix'
autoplot.MSM.lm
Autoplot 'MSwM::MSM.lm'
autoplot.pca_common
Autoplot PCA-likes
autoplot.RasterCommon
Autoplot 'raster::raster'
autoplot.SpatialCommon
Autoplot 'maps::map'
autoplot.spec
Autoplot 'stats::spec'
autoplot.stepfun
Plot 'stats::stepfun'
autoplot.survfit
Autoplot 'survival::survfit'
autoplot.ts
Autoplot time-series-like
autoplot.tsmodel
Autoplot time series models (like AR, ARIMA)
autoplot.varprd
Autoplot 'vars::varprd'
cbind_wraps
Wrapper for cbind
check_names
Check data names are equal with expected
confint.acf
Calcurate confidence interval for 'stats::acf'
deprecate.warning
Show deprecate warning
fitted.ar
Calcurate fitted values for 'stats::ar'
fortify.aareg
Convert 'survival::aareg' to 'data.frame'
fortify.acf
Convert 'stats::acf' to 'data.frame'
fortify_base
Convert 'base::table' to 'data.frame'
fortify.basis
Convert spline basis instances to 'data.frame'
fortify.cpt
Convert 'changepoint::cpt' and 'strucchange::breakpoints' to...
fortify.cv.glmnet
Convert 'glmnet::cv.glmnet' to 'data.frame'
fortify.density
Convert 'stats::density' to 'data.frame'
fortify.dist
Convert 'stats::dist' to 'data.frame'
fortify.ets
Convert 'forecast::bats' and 'forecast::ets' to 'data.frame'
fortify.factanal
Convert 'stats::factanal' to 'data.frame'
fortify.forecast
Convert 'forecast::forecast' to 'data.frame'
fortify.glmnet
Convert 'glmnet::glmnet' to 'data.frame'
fortify.kmeans
Convert cluster instances to 'data.frame'
fortify.lfda
Convert 'lfda::lfda' or 'lfda::klfda' or 'lfda::self' to...
fortify.list
Convert list to data.frame
fortify_map
Convert 'maps::map' to 'data.frame'.
fortify.matrix
Convert 'base::matrix' to 'data.frame'
fortify.MSM.lm
Convert 'MSwM::MSM.lm' to 'data.frame'
fortify.prcomp
Convert 'stats::prcomp', 'stats::princomp' to 'data.frame'
fortify.RasterCommon
Convert 'raster' to 'data.frame'
fortify.SpatialCommon
Convert 'sp' instances to 'data.frame'.
fortify.spec
Convert 'stats::spec' to 'data.frame'
fortify.stepfun
Convert 'stats::stepfun' to 'data.frame'
fortify.survfit
Convert 'survival::survfit' to 'data.frame'
fortify.table
Convert 'base::table' to 'data.frame'
fortify.ts
Convert time-series-like to data.frame
fortify.tsmodel
Convert time series models (like AR, ARIMA) to 'data.frame'
fortify.varprd
Convert 'vars::varprd' to 'data.frame'
geom_confint
Connect observations by stairs.
geom_factory
Factory function to control 'ggplot2::geom_xxx' functions
get.dtindex
Convert 'ts' index to 'Date' 'vector'
get.dtindex.continuous
Get 'Date' 'vector' continue to 'ts' index
get_geom_function
Factory function to control 'ggplot2::geom_xxx' functions
get.layout
Calcurate layout matrix for 'ggmultiplot'
ggbiplot
Draw 'biplot' using 'ggplot2'.
ggcpgram
Plots a cumulative periodogram
ggdistribution
Plot distribution
ggfortify
ggfortify
ggfreqplot
Plot seasonal subseries of time series, generalization of...
gglagplot
Plot time series against lagged versions of themselves
ggmultiplot-class
An S4 class to hold multiple 'ggplot2::ggplot' instances
ggtsdiag
Plots time-series diagnostics
grid.draw.ggmultiplot
The implemented grid.draw method for ggmultiplot, in order to...
infer
Infer class name
is_derived_from
Check object is target class, or object is 'data.frame'...
is.univariate
Check if Validates number of 'ts' variates
plot_confint
Attach confidence interval to 'ggplot2::ggplot'
plot_label
Attach label to 'ggplot2::ggplot'
plus-ggmultiplot-ANY-method
Generic add operator for 'ggmultiplot'
post_autoplot
Post process for fortify. Based on 'ggplot2::qplot'
post_fortify
Post process for fortify.
print-ggmultiplot-method
Generic print function for 'ggmultiplot'
rbind_ts
Rbind original and predicted time-series-like instances as...
residuals.ar
Calcurate residuals for 'stats::ar'
show-ggmultiplot-method
Generic show function for 'ggmultiplot'
support_autoplot
Check if passed object is supported by 'ggplot2::autoplot'
unscale
Backtransform 'scale'-ed object

Files in this package

ggfortify
ggfortify/inst
ggfortify/inst/CITATION
ggfortify/inst/doc
ggfortify/inst/doc/intro_Chinese.R
ggfortify/inst/doc/plot_dist.Rmd
ggfortify/inst/doc/plot_lm.R
ggfortify/inst/doc/plot_lm.Rmd
ggfortify/inst/doc/plot_ts.html
ggfortify/inst/doc/plot_map.Rmd
ggfortify/inst/doc/plot_pca.html
ggfortify/inst/doc/plot_surv.Rmd
ggfortify/inst/doc/plot_lm.html
ggfortify/inst/doc/basics.Rmd
ggfortify/inst/doc/plot_pca.Rmd
ggfortify/inst/doc/plot_ts.Rmd
ggfortify/inst/doc/basics.html
ggfortify/inst/doc/plot_pca.R
ggfortify/inst/doc/plot_surv.R
ggfortify/inst/doc/plot_ts.R
ggfortify/inst/doc/basics.R
ggfortify/inst/doc/plot_surv.html
ggfortify/inst/doc/plot_map.html
ggfortify/inst/doc/intro_Chinese.Rmd
ggfortify/inst/doc/plot_map.R
ggfortify/inst/doc/intro_Chinese.html
ggfortify/inst/doc/plot_dist.R
ggfortify/inst/doc/plot_dist.html
ggfortify/tests
ggfortify/tests/testthat
ggfortify/tests/testthat/Rplots.pdf
ggfortify/tests/testthat/test-stats.R
ggfortify/tests/testthat/test-vars.R
ggfortify/tests/testthat/test-surv.R
ggfortify/tests/testthat/test-spatial.R
ggfortify/tests/testthat/test-MSwM.R
ggfortify/tests/testthat/test-backcompat.R
ggfortify/tests/testthat/test-base-infer.R
ggfortify/tests/testthat/test-maps.R
ggfortify/tests/testthat/test-base_ts.R
ggfortify/tests/testthat/test_lint.R
ggfortify/tests/testthat/test-stats-density.R
ggfortify/tests/testthat/test-basis.R
ggfortify/tests/testthat/test-base.R
ggfortify/tests/testthat/test-raster.R
ggfortify/tests/testthat/test-stats-lm.R
ggfortify/tests/testthat/test-forecast.R
ggfortify/tests/testthat/test-tslib.R
ggfortify/tests/testthat/test-glmnet.R
ggfortify/tests/testthat/test-plotlib.R
ggfortify/tests/testthat/test-changepoint.R
ggfortify/tests/testthat/test-cluster.R
ggfortify/tests/testthat/test-util.R
ggfortify/tests/testthat/test-ts.R
ggfortify/tests/test-all.R
ggfortify/NAMESPACE
ggfortify/R
ggfortify/R/fortify_surv.R
ggfortify/R/fortify_raster.R
ggfortify/R/fortify_cluster.R
ggfortify/R/geom.R
ggfortify/R/fortify_glmnet.R
ggfortify/R/fortify_maps.R
ggfortify/R/plotlib.R
ggfortify/R/fortify_basis.R
ggfortify/R/fortify_spatial.R
ggfortify/R/tslib.R
ggfortify/R/fortify_stats_lm.R
ggfortify/R/base_fortify_ts.R
ggfortify/R/base_fortify_list.R
ggfortify/R/fortify_stats.R
ggfortify/R/fortify_changepoint.R
ggfortify/R/ggfortify.R
ggfortify/R/util.R
ggfortify/R/fortify_MSwM.R
ggfortify/R/fortify_stats_density.R
ggfortify/R/fortify_vars.R
ggfortify/R/fortify_base.R
ggfortify/R/fortify_forecast.R
ggfortify/vignettes
ggfortify/vignettes/plot_dist.Rmd
ggfortify/vignettes/plot_lm.Rmd
ggfortify/vignettes/plot_map.Rmd
ggfortify/vignettes/plot_surv.Rmd
ggfortify/vignettes/basics.Rmd
ggfortify/vignettes/plot_pca.Rmd
ggfortify/vignettes/plot_ts.Rmd
ggfortify/vignettes/intro_Chinese.Rmd
ggfortify/MD5
ggfortify/build
ggfortify/build/vignette.rds
ggfortify/DESCRIPTION
ggfortify/man
ggfortify/man/autoplot.map.Rd
ggfortify/man/fortify.cv.glmnet.Rd
ggfortify/man/fortify.table.Rd
ggfortify/man/fortify.SpatialCommon.Rd
ggfortify/man/autoplot.SpatialCommon.Rd
ggfortify/man/fortify.forecast.Rd
ggfortify/man/fortify.stepfun.Rd
ggfortify/man/autoplot.RasterCommon.Rd
ggfortify/man/fortify.density.Rd
ggfortify/man/grid.draw.ggmultiplot.Rd
ggfortify/man/fortify.ts.Rd
ggfortify/man/get_geom_function.Rd
ggfortify/man/fitted.ar.Rd
ggfortify/man/get.layout.Rd
ggfortify/man/fortify_base.Rd
ggfortify/man/fortify.varprd.Rd
ggfortify/man/fortify.spec.Rd
ggfortify/man/geom_factory.Rd
ggfortify/man/fortify.glmnet.Rd
ggfortify/man/fortify.aareg.Rd
ggfortify/man/gglagplot.Rd
ggfortify/man/autoplot.kmeans.Rd
ggfortify/man/check_names.Rd
ggfortify/man/ggmultiplot-class.Rd
ggfortify/man/plot_confint.Rd
ggfortify/man/plot_label.Rd
ggfortify/man/infer.Rd
ggfortify/man/fortify.list.Rd
ggfortify/man/get.dtindex.continuous.Rd
ggfortify/man/autoplot.pca_common.Rd
ggfortify/man/fortify.prcomp.Rd
ggfortify/man/ggtsdiag.Rd
ggfortify/man/autoplot.ggplot.Rd
ggfortify/man/rbind_ts.Rd
ggfortify/man/fortify.tsmodel.Rd
ggfortify/man/confint.acf.Rd
ggfortify/man/geom_confint.Rd
ggfortify/man/residuals.ar.Rd
ggfortify/man/fortify.factanal.Rd
ggfortify/man/is.univariate.Rd
ggfortify/man/autoplot.stepfun.Rd
ggfortify/man/fortify.dist.Rd
ggfortify/man/autoplot.varprd.Rd
ggfortify/man/fortify.matrix.Rd
ggfortify/man/ggfortify.Rd
ggfortify/man/fortify.MSM.lm.Rd
ggfortify/man/unscale.Rd
ggfortify/man/fortify.ets.Rd
ggfortify/man/plus-ggmultiplot-ANY-method.Rd
ggfortify/man/post_fortify.Rd
ggfortify/man/autoplot.aareg.Rd
ggfortify/man/is_derived_from.Rd
ggfortify/man/autoplot.density.Rd
ggfortify/man/autoplot.tsmodel.Rd
ggfortify/man/autoplot.cpt.Rd
ggfortify/man/autoplot.survfit.Rd
ggfortify/man/autoplot.list.Rd
ggfortify/man/fortify.RasterCommon.Rd
ggfortify/man/fortify.survfit.Rd
ggfortify/man/autoplot.glmnet.Rd
ggfortify/man/get.dtindex.Rd
ggfortify/man/autoplot.spec.Rd
ggfortify/man/fortify.basis.Rd
ggfortify/man/fortify.acf.Rd
ggfortify/man/autoplot.acf.Rd
ggfortify/man/autoplot.basis.Rd
ggfortify/man/autoplot.lm.Rd
ggfortify/man/autoplot.ggmultiplot.Rd
ggfortify/man/print-ggmultiplot-method.Rd
ggfortify/man/ggfreqplot.Rd
ggfortify/man/autoplot.ts.Rd
ggfortify/man/deprecate.warning.Rd
ggfortify/man/as_tibble.basis.Rd
ggfortify/man/fortify.lfda.Rd
ggfortify/man/fortify.cpt.Rd
ggfortify/man/cbind_wraps.Rd
ggfortify/man/ggbiplot.Rd
ggfortify/man/fortify_map.Rd
ggfortify/man/ggcpgram.Rd
ggfortify/man/autoplot.MSM.lm.Rd
ggfortify/man/apply_facets.Rd
ggfortify/man/autoplot.forecast.Rd
ggfortify/man/fortify.kmeans.Rd
ggfortify/man/autoplot.breakpoints.Rd
ggfortify/man/support_autoplot.Rd
ggfortify/man/show-ggmultiplot-method.Rd
ggfortify/man/autoplot.matrix.Rd
ggfortify/man/autoplot.cv.glmnet.Rd
ggfortify/man/ggdistribution.Rd
ggfortify/man/post_autoplot.Rd