emale_ngaros | R Documentation |
Integrated Ngaro retrotransposons of 6 EMALE genomes
emale_ngaros
A data frame with 3 rows and 14 columns
name of the file the data was read from
identifier of the sequence the feature appears on
start of the feature on the sequence
end of the feature on the sequence
orientation of the feature relative to the sequence (+ or -)
feature type (CDS, mRNA, gene, ...)
unique identifier of the feature
a list column with internal intron start/end positions
a list column with parent IDs - feat_id's of parent features
source of the annotation
score of the annotation
For "CDS" features indicates where the next codon begins relative to the 5' start
name of the feature
an identifier telling the which features should be plotted as on items (usually CDS and mRNA of same gene)
Publication: \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1101/2020.11.30.404863")}
Raw data: https://github.com/thackl/cb-emales
Derived & bundled data: ex("emales/emales-ngaros.gff")
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