Description Usage Arguments Details Value Author(s) References Examples

`bigDivPart`

allows for the calculation of four main diversity partition statistics and their respective estimators from large genepop files.

1 2 |

`infile` |
Specifying the name of the |

`outfile` |
Allows users to specify a prefix for an output folder. Name must a character string enclosed in either “” or ''. |

`WC_Fst` |
A Logical argument indicating whether Weir & Cockerham's 1984 F-statistics should be calculated. |

`format` |
A character string specifying the preferred output format for calculated results. The arguments |

All results are optionally written to a user defined directory in either .xlsx or .txt format. The function is identical to the `divPart`

function without the pairwise or bootstrapping functionality.

`standard` |
A matrix containing identical data to the |

`estimate` |
A matrix containing identical data to the |

Kevin Keenan <kkeenan02@qub.ac.uk>

Dragulescu, A.D., “xlsx: Read, write, formal Excel 2007 and Excel 97/2000/xp/2003 files”, R package version 0.4.2, url:http://CRAN.R-project.org/package=xlsx, (2012).

Guile, D.P., Shepherd, L.A., Sucheston, L., Bruno, A., and Manly, K.F., “sendplot: Tool for sending interactive plots with tool-tip content.”, R package version 3.8.10, url: http://CRAN.R-project.org/package=sendplot, (2012).

Hedrick, P., “A standardized genetic differentiation measure,” Evolution, vol. 59, no. 8, pp. 1633-1638, (2005).

Jost, L., “G ST and its relatives do not measure differentiation,” Molec- ular Ecology, vol. 17, no. 18, pp. 4015-4026, (2008).

Manly, F.J., “Randomization, bootstrap and Monte Carlo methods in biology”, Chapman and Hall, London, 1997.

Nei, M. and Chesser, R., “Estimation of fixation indices and gene diver- sities,” Ann. Hum. Genet, vol. 47, no. Pt 3, pp. 253-259, (1983).

R Development Core Team (2011). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0, URL http://www.R-project.org/.

Revolution Analytics (2012). doParallel: Foreach parallel adaptor for the parallel package. R package version 1.0.1. http://CRAN.R-project.org/package=doParallel

Revolution Analytics (2012). foreach: Foreach looping construct for R. R package version 1.4.0. http://CRAN.R-project.org/package=foreach

Rousset, F., “genepop'007: a complete re-implementation of the genepop software for Windows and Linux.,” Molecular ecology resources, vol. 8, no. 1, pp. 103-6, (2008).

Weir, B.S. & Cockerham, C.C., Estimating F-Statistics, for the Analysis of Population Structure, Evolution, vol. 38, No. 6, pp. 1358-1370 (1984).

1 2 3 4 5 6 7 | ```
## Not run:
# simply use the following format to run the function
test_result <- bigDivPart(infile = 'mydata', outfile = "myresults',
WC_Fst = TRUE, format = "txt")
## End(Not run)
``` |

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